Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00082 ATGCAGAAGGATATGAACAATATTGGGGTAAAGAAGAGAGGTCATGGGAATCGTTCTTGGATAAAGATTGATCAGGAAGGGAACTCAGAGGTTTTGGAGCTTGAGAAGGCTACTATAATGAGGCATTGTTCTTTACCTTCAAGAGATATGCGACTTTTGGATCCGCTCTTCCTTTGCCCGTCCACAATTCTCGGGAGGGAGAAGGCGATCGTTGTCAGTCTCGAGCAAATTCGGTGTATAATCACAGCTGATGAGGTGATTCTGATGAACTCCTTAGATGGATGTGCTGCTCAGTACAAGGCAGAGCTGTGCAAGCGTCTCCATGCAAGTAAAGATCAATCAGATGATTTGCCCTTTGAATTTAGGGCACTGGAGCTGGCGCTGGAACTTACTTGTTCATTTCTTGACACTCAGATGAAGGGGATGGAAATCGAGATATACCCTCTACTGGATGCTTTAGCGTCTTCAATAAACACGCTTAATCTCGAAAGAGTTCGAAGATTTAAAGGCAACCTTCTGTCCTTGACTCAACAAGTGCAAAAGGTTCGTGATGAAGTCGAGCATCTGATGGACGATGATGGGGATATGGCAGAGATGTTTCTGACAGAAAAGAAACAAAGATTGGAGGCGAACATCCGAAGTAACTTGTATCTCGAAACTAGTTTCTTCGGGAAACCAAAATCTGCTCCTGTTTCACCAGTGGGTTCGACCAATGGATCTTATAAATTACAAAGGGCTTTTAGCAGTATTGTAAACTCGAGCAGCTTGATGAGTTCATCAAACGGTGGTGATAACGTCGAACAATTGGAGATGCTGCTCGAGGCGTACTTCGTGGTTATTGACGACATGCTCAGTAAATTGTTATCGCTCAAAGAATCTATAGATGACACAGAAGATCTGATCAACATTAAACTGGGCAACGTTCAGAACCAGCTGATACAATTCCAGGTGCTTTTCACTGCAGCTACGTTCTTGGCTACGATGTTTGCAGCGTTAACTGCAGTTTTCGGCATGAATTTTTCCGACGATGTCTTCGAGCATCCGACTTCTTTCCAGTGGATAGTTTACTTGACCTTGATTGCCTGTGGCCTTGTGTTTATCTCTTTTCTATTCTATTTTAGGTACAAGAAAATCTTCCCATTGTAA 1146 43.11 MQKDMNNIGVKKRGHGNRSWIKIDQEGNSEVLELEKATIMRHCSLPSRDMRLLDPLFLCPSTILGREKAIVVSLEQIRCIITADEVILMNSLDGCAAQYKAELCKRLHASKDQSDDLPFEFRALELALELTCSFLDTQMKGMEIEIYPLLDALASSINTLNLERVRRFKGNLLSLTQQVQKVRDEVEHLMDDDGDMAEMFLTEKKQRLEANIRSNLYLETSFFGKPKSAPVSPVGSTNGSYKLQRAFSSIVNSSSLMSSSNGGDNVEQLEMLLEAYFVVIDDMLSKLLSLKESIDDTEDLINIKLGNVQNQLIQFQVLFTAATFLATMFAALTAVFGMNFSDDVFEHPTSFQWIVYLTLIACGLVFISFLFYFRYKKIFPL 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 443820 448418 - CmoCh12G000820.1 Cmo12g00082 392770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00082 381 Coils Coil 165 192 - -
Cmo12g00082 381 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 6 381 IPR039204 -
Cmo12g00082 381 CDD Mrs2_Mfm1p-like 20 378 IPR039204 -
Cmo12g00082 381 Gene3D Magnesium transport protein CorA, transmembrane region 94 312 - -
Cmo12g00082 381 Gene3D - 5 91 - -
Cmo12g00082 381 PANTHER MAGNESIUM TRANSPORTER MRS2-5 6 381 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00082 K16075 MRS2, MFM1; magnesium transporter - csv:101220835 632.869
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00082 Cmo-Chr12:443820 Cmo14g01066 Cmo-Chr14:5873476 1.49E-145 dispersed
Cmo12g00082 Cmo-Chr12:443820 Cmo01g00196 Cmo-Chr1:883750 2.48E-148 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo14g01066 CST 1 447 MRS2 Gene Family AT1G16010 84.1 4.0e-205 711.4
Cmo01g00196 CST 1 448 MRS2 Gene Family AT1G16010 83.5 3.7e-203 704.9
Cmo12g00082 . 8 381 MRS2 Gene Family AT1G16010 53.7 7.4e-111 398.3
Cmo17g00183 CST 1 366 MRS2 Gene Family AT5G64560 79.3 7.7e-157 550.8
Cmo08g01086 CST 1 358 MRS2 Gene Family AT5G64560 79.3 1.1e-155 547.0
Cmo19g00057 . 1 353 MRS2 Gene Family AT5G64560 64.3 2.8e-114 409.5
Cmo11g01427 CST 39 498 MRS2 Gene Family AT3G19640 64.4 2.6e-149 526.2
Cmo19g00556 CST 14 539 MRS2 Gene Family AT3G19640 55.3 1.9e-139 493.4
Cmo04g00575 . 1 456 MRS2 Gene Family AT3G58970 62.5 1.5e-143 506.9
Cmo16g00423 CST 1 457 MRS2 Gene Family AT3G58970 58.3 1.8e-125 446.8
Cmo12g00082 . 9 381 MRS2 Gene Family AT2G03620 66.6 3.0e-133 472.6
Cmo14g01066 CST 13 447 MRS2 Gene Family AT2G03620 53.7 2.6e-113 406.4
Cmo01g00196 CST 13 448 MRS2 Gene Family AT2G03620 52.9 1.7e-112 403.7
Cmo08g01086 CST 1 320 MRS2 Gene Family AT5G09690 77.5 1.1e-127 453.8
Cmo17g00183 CST 1 328 MRS2 Gene Family AT5G09690 74.9 1.2e-126 450.3
Cmo19g00057 . 1 314 MRS2 Gene Family AT5G09690 62.0 1.9e-95 346.7
Cmo01g00196 CST 40 384 MRS2 Gene Family AT5G09690 50.1 3.5e-78 289.3
Cmo14g01066 CST 40 383 MRS2 Gene Family AT5G09690 50.6 4.6e-78 288.9
Cmo08g01086 CST 23 280 MRS2 Gene Family AT5G09720 70.1 1.4e-89 327.0
Cmo17g00183 CST 23 288 MRS2 Gene Family AT5G09720 66.8 6.5e-87 318.2
Cmo19g00057 . 37 285 MRS2 Gene Family AT5G09720 58.6 1.4e-68 257.3
Cmo14g01066 CST 1 447 MRS2 Gene Family AT1G80900 82.6 8.6e-200 693.7
Cmo01g00196 CST 1 448 MRS2 Gene Family AT1G80900 81.7 4.0e-197 684.9
Cmo12g00082 . 5 381 MRS2 Gene Family AT1G80900 54.1 1.2e-108 391.0
Cmo13g00275 . 114 453 MRS2 Gene Family AT5G22830 83.8 1.9e-157 553.1
Cmo12g00817 . 114 453 MRS2 Gene Family AT5G22830 81.8 5.3e-152 535.0
Cmo13g00277 . 114 257 MRS2 Gene Family AT5G22830 79.9 4.0e-59 226.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008212 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00082 Cmo_Chr12 FPKM 0.292517 0.504513 0.627192 0.817747 0.879256 0.800891 1.187181 8.266565 9.061674 9.499288