Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00087 ATGGGAAGAGGTAAGGTGGAGCTGAAGAAGATAGAGAACAAAATAAACCGACAGGTGACCTTCACAAAACGAAGAAATGGCCTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAGGTGGCACTCATCGTCTTCTCCACCGGTGGCAAGCTCTATGAATTCTCCAGCTCTTCCAGTATAGCCAAGACGTTGGAGAGGTATCAAAGACATAGCTATGGAGCTTTGGCAGCCTCCCATCATCTCAAGGACACCGAGAAATGGTACGAGGAGTATTTGAAGCTGAAAGAAGAAGTGGAAGGTCTGCAGCATTCACAGAGACGAATTCTTGGAGAAGAATTGGAAGATTTGGAGACGAAGGAATTGGACCAACTCGAAATTCAATTGGAAACGTCTCTGAAGCAAATCAGGTTCACTAAGAACCAAACGGTGTTTGATCAGTTATCTGAGCTAAAAAAGAAGGAAGAATTACTGCTGGAAACTAATCAAGCTTTGAGGAGGAAGTTGGAAGAAAGCAGTGCAGGTCTTCATTCATCATGGGAAGCTTCGGAACCCAACAATTTGCATTACTGTGGACAACCTGAGGCCTTTCTTCAAGGCAATAATATTGCATTGGAAAATAGTTACAATCCAGCAGAGGTTTCAAATCAAGAAAACGCCATAAACTCTGAGCCAGAAGGTAATGAGTTGCCTTCGCATTGGATGATGCTTTGA 720 43.19 MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSSSSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEESSAGLHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 471646 473973 + CmoCh12G000870.1 Cmo12g00087 392775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00087 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 216 - -
Cmo12g00087 239 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo12g00087 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo12g00087 239 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Cmo12g00087 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo12g00087 239 MobiDBLite consensus disorder prediction 217 239 - -
Cmo12g00087 239 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cmo12g00087 239 Coils Coil 124 144 - -
Cmo12g00087 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo12g00087 239 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo12g00087 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo12g00087 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo12g00087 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo12g00087 239 PANTHER - 1 216 - -
Cmo12g00087 239 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Cmo12g00087 239 Coils Coil 150 173 - -
Cmo12g00087 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00087 Cmo-Chr12:471646 Cmo18g00020 Cmo-Chr18:82092 4.97E-69 dispersed
Cmo12g00087 Cmo-Chr12:471646 Cmo12g00088 Cmo-Chr12:477126 1.96E-48 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10687 PF01486 K-box 1.80E-24 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00087 K09264 - csv:101220998 344.739