Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g00087 | ATGGGAAGAGGTAAGGTGGAGCTGAAGAAGATAGAGAACAAAATAAACCGACAGGTGACCTTCACAAAACGAAGAAATGGCCTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAGGTGGCACTCATCGTCTTCTCCACCGGTGGCAAGCTCTATGAATTCTCCAGCTCTTCCAGTATAGCCAAGACGTTGGAGAGGTATCAAAGACATAGCTATGGAGCTTTGGCAGCCTCCCATCATCTCAAGGACACCGAGAAATGGTACGAGGAGTATTTGAAGCTGAAAGAAGAAGTGGAAGGTCTGCAGCATTCACAGAGACGAATTCTTGGAGAAGAATTGGAAGATTTGGAGACGAAGGAATTGGACCAACTCGAAATTCAATTGGAAACGTCTCTGAAGCAAATCAGGTTCACTAAGAACCAAACGGTGTTTGATCAGTTATCTGAGCTAAAAAAGAAGGAAGAATTACTGCTGGAAACTAATCAAGCTTTGAGGAGGAAGTTGGAAGAAAGCAGTGCAGGTCTTCATTCATCATGGGAAGCTTCGGAACCCAACAATTTGCATTACTGTGGACAACCTGAGGCCTTTCTTCAAGGCAATAATATTGCATTGGAAAATAGTTACAATCCAGCAGAGGTTTCAAATCAAGAAAACGCCATAAACTCTGAGCCAGAAGGTAATGAGTTGCCTTCGCATTGGATGATGCTTTGA | 720 | 43.19 | MGRGKVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIVFSTGGKLYEFSSSSSIAKTLERYQRHSYGALAASHHLKDTEKWYEEYLKLKEEVEGLQHSQRRILGEELEDLETKELDQLEIQLETSLKQIRFTKNQTVFDQLSELKKKEELLLETNQALRRKLEESSAGLHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML | 239 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 471646 | 473973 | + | CmoCh12G000870.1 | Cmo12g00087 | 392775 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g00087 | 239 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 216 | - | - | |
Cmo12g00087 | 239 | ProSiteProfiles | K-box domain profile. | 87 | 177 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cmo12g00087 | 239 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo12g00087 | 239 | CDD | MADS_MEF2_like | 2 | 78 | IPR033896 | GO:0000977|GO:0045944 | |
Cmo12g00087 | 239 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo12g00087 | 239 | MobiDBLite | consensus disorder prediction | 217 | 239 | - | - | |
Cmo12g00087 | 239 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo12g00087 | 239 | Coils | Coil | 124 | 144 | - | - | |
Cmo12g00087 | 239 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo12g00087 | 239 | Pfam | K-box region | 85 | 172 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cmo12g00087 | 239 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo12g00087 | 239 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo12g00087 | 239 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo12g00087 | 239 | PANTHER | - | 1 | 216 | - | - | |
Cmo12g00087 | 239 | SUPERFAMILY | SRF-like | 2 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo12g00087 | 239 | Coils | Coil | 150 | 173 | - | - | |
Cmo12g00087 | 239 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo12g00087 | Cmo-Chr12:471646 | Cmo18g00020 | Cmo-Chr18:82092 | 4.97E-69 | dispersed | |
Cmo12g00087 | Cmo-Chr12:471646 | Cmo12g00088 | Cmo-Chr12:477126 | 1.96E-48 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10687 | PF01486 | K-box | 1.80E-24 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g00087 | K09264 | - | csv:101220998 | 344.739 |