Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00088 ATGGGAAGAGGTAGGGTTCAACTGAAAAGAATTGAGAACAAAATAAACAGGCAGGTTACTTTCTCCAAAAGGAAAGCTGGTTTGCTGAAGAAGGCTCATGAAATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGTATGGAGAAAATACTCGAACGATATGAGCGATATTCATATGTGGGCAGGCAACAAATTGCAGCTACTGAATCTGAATTTTCACAGGAAAATTGGACTCTCGAGTATTATAGACTCAAATCGAGAGTCGAACTCTTACAAAGAAACAACAGTCATTACATGGGAGAAGATTTGGATTCATTAAGCGTCAAAGAACTGCAAAACTTGGAGCAACAAATCGACACTGCACTCAAACATGAACGAGCAATTCAGGAACAAAACGCTCTCCTGGCAAAGCAGATCAAGGAGAAGGAGAAGAGTGTAGCAATGGCTCAGCAGGCCGAGTGGGAGCAGCAGCAGCAACATGGTTACAATGCACTGTCTTTCTTGTTCCCATCAGCTCCTCACCCGTCTCTAAACATCGGGCTTGCGAGCTTTGATGGTCACCTGTGA 615 43.25 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLDSLSVKELQNLEQQIDTALKHERAIQEQNALLAKQIKEKEKSVAMAQQAEWEQQQQHGYNALSFLFPSAPHPSLNIGLASFDGHL 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 477126 481649 + CmoCh12G000880.1 Cmo12g00088 392776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00088 204 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Cmo12g00088 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo12g00088 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo12g00088 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo12g00088 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo12g00088 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo12g00088 204 Coils Coil 127 147 - -
Cmo12g00088 204 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Cmo12g00088 204 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 182 - -
Cmo12g00088 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo12g00088 204 ProSiteProfiles K-box domain profile. 90 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo12g00088 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo12g00088 204 Pfam K-box region 85 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo12g00088 204 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Cmo12g00088 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00088 Cmo-Chr12:477126 Cmo13g01103 Cmo-Chr13:9050079 1.11E-82 dispersed
Cmo12g00087 Cmo-Chr12:471646 Cmo12g00088 Cmo-Chr12:477126 1.96E-48 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10688 PF01486 K-box 6.40E-16 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00088 K09264 - csv:101219414 350.132