Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g00088 | ATGGGAAGAGGTAGGGTTCAACTGAAAAGAATTGAGAACAAAATAAACAGGCAGGTTACTTTCTCCAAAAGGAAAGCTGGTTTGCTGAAGAAGGCTCATGAAATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGTATGGAGAAAATACTCGAACGATATGAGCGATATTCATATGTGGGCAGGCAACAAATTGCAGCTACTGAATCTGAATTTTCACAGGAAAATTGGACTCTCGAGTATTATAGACTCAAATCGAGAGTCGAACTCTTACAAAGAAACAACAGTCATTACATGGGAGAAGATTTGGATTCATTAAGCGTCAAAGAACTGCAAAACTTGGAGCAACAAATCGACACTGCACTCAAACATGAACGAGCAATTCAGGAACAAAACGCTCTCCTGGCAAAGCAGATCAAGGAGAAGGAGAAGAGTGTAGCAATGGCTCAGCAGGCCGAGTGGGAGCAGCAGCAGCAACATGGTTACAATGCACTGTCTTTCTTGTTCCCATCAGCTCCTCACCCGTCTCTAAACATCGGGCTTGCGAGCTTTGATGGTCACCTGTGA | 615 | 43.25 | MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSMEKILERYERYSYVGRQQIAATESEFSQENWTLEYYRLKSRVELLQRNNSHYMGEDLDSLSVKELQNLEQQIDTALKHERAIQEQNALLAKQIKEKEKSVAMAQQAEWEQQQQHGYNALSFLFPSAPHPSLNIGLASFDGHL | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 477126 | 481649 | + | CmoCh12G000880.1 | Cmo12g00088 | 392776 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g00088 | 204 | CDD | MADS_MEF2_like | 2 | 79 | IPR033896 | GO:0000977|GO:0045944 | |
Cmo12g00088 | 204 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo12g00088 | 204 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo12g00088 | 204 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo12g00088 | 204 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo12g00088 | 204 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo12g00088 | 204 | Coils | Coil | 127 | 147 | - | - | |
Cmo12g00088 | 204 | SUPERFAMILY | SRF-like | 2 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo12g00088 | 204 | PANTHER | TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A | 1 | 182 | - | - | |
Cmo12g00088 | 204 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo12g00088 | 204 | ProSiteProfiles | K-box domain profile. | 90 | 176 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cmo12g00088 | 204 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo12g00088 | 204 | Pfam | K-box region | 85 | 168 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cmo12g00088 | 204 | Gene3D | - | 13 | 86 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo12g00088 | 204 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 182 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo12g00088 | Cmo-Chr12:477126 | Cmo13g01103 | Cmo-Chr13:9050079 | 1.11E-82 | dispersed | |
Cmo12g00087 | Cmo-Chr12:471646 | Cmo12g00088 | Cmo-Chr12:477126 | 1.96E-48 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10688 | PF01486 | K-box | 6.40E-16 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g00088 | K09264 | - | csv:101219414 | 350.132 |