Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00096 ATGAGAACGGCGAAAAGCATTCAGGAAGACGAAGAGTACGAGGAGGACGAGCTGGTTGCTAAAAGAGAGGGACCTGCTTCTAGTTACAACGCAAACAGTAGCATCGGAAACAGCAAAGATGGGAAGAACGATGATAAGGCTAATGCCATAAGGTCGAAGCATTCAGTCACGGAACAGCGCAGAAGAAGCAAGATTAATGAGAGATTCCAGATTTTGAGAGATCTCATACCTCACAGCGACCAAAAGAGAGATACCGTATCGTTCTTACTGGAGGTGATTGAGTATGTACAGTATTTACAGGAAAAGGTGCAGAAATACGAGGGTTCATATCAGAATTGGAGTGGGGAACCTACTAAGTTGATACCATGGAGAAATAGTCATTGGCGTATGCCGACTTTTGTTGGCCATCCCGAGTCTGTAAAAAATGGTTCTGCTTCAGGACCAATGTATTCGGGGAAGTTTGATGACAACAACATTTCAATTTCACCAGCCATGCTTGCGAGCTCACAGAATCCTCTCGAGTCCCACGCAGGCAGAGATATTCTACAGGATGCTGACATAACAAATAAAGTTCCACTTCCCATGTCTCTGGAAGGAAATACACATGCTTCTATCCGTAGTGATGGTGTTCATGATCAATCTCTCCACGTTCCAATTTCTGATGCACAGACAACAGAGTGTCCCATCACCAACAATGCATCAAGCCAACCGGAGGAGATGAGCATTCAAGGGGGGACAATAAGCGTTTCGAGTCTTTATTCGGAAGGGTTATTGAACAGCTTGACTCAAGCTCTGCAGAATACTGGACTGGATTTGTCACAGGCTAGTATCTCCGTTCAGATTGATCTGGGCAAGAGAGCGAATAAGCGAACGCCATGCGGAACCCCTATTTATAAGGAAACTGGGAATCCTCCCTCCGGCCACCCATCATTGGCACATGAAGGGGACCTGGACAGTGAAGACGACTCAGATCAAGTCAAAAAGCGGCGTAGGACATGA 999 46.05 MRTAKSIQEDEEYEEDELVAKREGPASSYNANSSIGNSKDGKNDDKANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTVSFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMPTFVGHPESVKNGSASGPMYSGKFDDNNISISPAMLASSQNPLESHAGRDILQDADITNKVPLPMSLEGNTHASIRSDGVHDQSLHVPISDAQTTECPITNNASSQPEEMSIQGGTISVSSLYSEGLLNSLTQALQNTGLDLSQASISVQIDLGKRANKRTPCGTPIYKETGNPPSGHPSLAHEGDLDSEDDSDQVKKRRRT 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 515626 518714 - CmoCh12G000960.1 Cmo12g00096 392784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00096 332 Gene3D - 47 119 IPR036638 GO:0046983
Cmo12g00096 332 MobiDBLite consensus disorder prediction 39 62 - -
Cmo12g00096 332 CDD bHLH_AtBIM_like 48 124 - -
Cmo12g00096 332 MobiDBLite consensus disorder prediction 1 62 - -
Cmo12g00096 332 PANTHER TRANSCRIPTION FACTOR BIM2 1 332 - -
Cmo12g00096 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983
Cmo12g00096 332 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 332 IPR044295 GO:0003700|GO:0006351|GO:0046983
Cmo12g00096 332 MobiDBLite consensus disorder prediction 313 332 - -
Cmo12g00096 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 119 IPR036638 GO:0046983
Cmo12g00096 332 MobiDBLite consensus disorder prediction 288 332 - -
Cmo12g00096 332 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983
Cmo12g00096 332 SMART finulus 55 105 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00294 Cmo-Chr10:1304106 Cmo12g00096 Cmo-Chr12:515626 7.58E-66 dispersed
Cmo12g00096 Cmo-Chr12:515626 Cmo18g00016 Cmo-Chr18:64854 2.76E-60 dispersed
Cmo12g00096 Cmo-Chr12:515626 Cmo05g00485 Cmo-Chr5:2277565 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10689 PF00010 HLH 3.20E-13 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00096 - - mcha:111004954 557.37