Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00101 ATGGCTACTGAGGGCAGTCCCAGGACTGATATCTCAACAGATGGGGACACAGACGAAAAAAGTCGGAGGTCTAACGATCGGGCCCTAACACTTGTTATGGCTTCGGATTCTAGTGACAGATCAAAGGATAAAACTGATCAGAAGACTCTTCGTCGGTTAGCTCAAAATCGTGAGGCTGCTAGGAAAAGTCGATTGAGGAAGAAAGCTTATGTTCAACAACTAGAGAGCAGTCGTTTAAAGCTGACACAACTCGAGCAGGAGCTTCAACGAGCACGACAGCAGGGAATTTTCATATCAAGCTCAGGTGACCAGACCCATTCAATGAGTGGCAATGGAGCCATGGCATTCGACGTAGAATATGCTCGATGGCTTGAAGATCACAACCGTCAAATGAACGAATTGAGATCCGCTGTTAATTCTCATGCAAGTGACCCGGAACTGCGTATTGTAGTCGATGGCATCTTGGTTCATTACGATGAGCTTTTCAGGCTCAAGGGAAATGCAGCGAAGGCTGACGTTTTCCATTTGTTATCAGGCATGTGGAAAACACCTGCCGAAAGATGTTTTCTTTGGCTCGGGGGTTTTCGTTCATCCGAGCTCCTAAAGCTTCTTGTAAATCAACTGGAGCCTCTAACAGAGCAGCAGTTGGTGGGAATCACAAACTTGCAGCAGTCATCACAGCAAGCAGAAGATGCTTTATCACAAGGGATGGAGGCCTTGCAACAGTCCCTGGCCGAGACGTTGTCGAGTGGATCTCTCGGCTCCTCCAGTTCGTCGGGGAACGTTGCAAACTACATGGGTCAGATGGCTATGGCGATGGGCCGACAATCTGCGACAACAGACACTTCAACAAATGCACCGAATATTGACAACTCGTCAGTCTGCTCGTGCGCTTCTCGCCGTACATGA 909 48.4 MATEGSPRTDISTDGDTDEKSRRSNDRALTLVMASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMSGNGAMAFDVEYARWLEDHNRQMNELRSAVNSHASDPELRIVVDGILVHYDELFRLKGNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSSSSGNVANYMGQMAMAMGRQSATTDTSTNAPNIDNSSVCSCASRRT 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 546760 554278 - CmoCh12G001010.1 Cmo12g00101 392789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00101 302 SUPERFAMILY Leucine zipper domain 48 91 IPR046347 GO:0003700|GO:0006355
Cmo12g00101 302 Gene3D - 47 99 - -
Cmo12g00101 302 Pfam Seed dormancy control 130 205 IPR025422 GO:0006351|GO:0043565
Cmo12g00101 302 PANTHER TRANSCRIPTION FACTOR TGA9 4 279 - -
Cmo12g00101 302 MobiDBLite consensus disorder prediction 274 302 - -
Cmo12g00101 302 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 51 66 IPR004827 GO:0003700|GO:0006355
Cmo12g00101 302 SMART brlzneu 44 107 IPR004827 GO:0003700|GO:0006355
Cmo12g00101 302 Coils Coil 67 94 - -
Cmo12g00101 302 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 46 90 IPR004827 GO:0003700|GO:0006355
Cmo12g00101 302 Pfam bZIP transcription factor 48 88 IPR004827 GO:0003700|GO:0006355
Cmo12g00101 302 CDD bZIP_HBP1b-like 48 100 - -
Cmo12g00101 302 ProSiteProfiles DOG1 domain profile. 113 302 IPR025422 GO:0006351|GO:0043565
Cmo12g00101 302 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 4 279 - -
Cmo12g00101 302 Coils Coil 124 144 - -
Cmo12g00101 302 MobiDBLite consensus disorder prediction 11 26 - -
Cmo12g00101 302 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00101 Cmo-Chr12:546760 Cmo14g00514 Cmo-Chr14:2538400 4.08E-142 dispersed
Cmo12g00101 Cmo-Chr12:546760 Cmo18g00857 Cmo-Chr18:9890829 7.84E-164 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10690 PF14144 DOG1 5.80E-32 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00101 K14431 - csv:101213210 478.018