Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00116 ATGGAATTCGTGGCGCGAGATGATTACGTGGACCTAGTAAATCATAATTGTGGACACAAATGCCACCCAGAATTTACGGCCGTCATTCAACGCCGAGCCGGGAACGGCCGGTTCAAAGAAACCGGTGGTTTCGCTGAAAGCCCACGGGGTGTCCCCACCTGTTCACTCCACGTCACCACTCCGCTTCCGTTCACTGAGCCAACTCAGTCCCGGTTCCGTCCCGTCCCATCCCGTTCTGTTTCCGCTATAAAAGCAACCGCTCTACGAGATCATCTGTTTGAATTTCCTTTCTTCGTTCTTTTGATCTGTTTCTCTTCGACATCTGTTGGTTTTGCCTGTTTTCTCGCCATTTCAAGGCTGATGGAGCATTTTCAGAATGACGATCTTGCTGTGAATGATTTTGACGATGGTGGATTTTTCTCTGATGATGAGTTCCATACTGATCAGAATATTGAGCATATAGACTCCGACTTCGAAGACGACATGGATACAAGCACGCCGAAGACGGATACCTCTGCTTTCGACGCTAGGAATGGGAAAGATATCCAGGGAATACCTTGGGAGAGGTTCGCCTTCACCAGAGATAATTATCGGGAAAAACGTTTGAGCCAGTACAAGAACTATGAGAGTCTGTCACGCTCTCGTGTGGAACTGGAAAAGGAATGCTTGCAAGTGGAGAAGGGGAATAATTTTTATGACTTCCAGTTCAATACGAGGCTTGTTAAATCAACCATTGTTCATTTTCAGCTAAGAAATCTCTTGTGGGCAACTTCTAAGCATGATGTATACCTTATGCAAAACTACTCAGTAATGCACTGGTCTCCACTGCTTCGGAGAGGCAAAGAAGTACTCAATGTGGCTAAACAAATTGTTCCCACCGTGAAACGCCCTGGAGTCTCATCCCAGTCACTGTCTAGAGTTCAGATAAGTGCAATGTCAGTTAAGGAGAACTTGATTGTGGCTGGTGGTTTCCAAGGGGAACTAATTTGCAAGTACTTGAATCATCCTGGAGTTGCATTTTGCACCAAAATGACAACTGAAGAAAATGCAATCACAAATGCTGTTGATATATTTCATAATCCCAATGGTGCAATGAGGATCATCACAGGAAATAATGATGCAAAAGTTAGGATTTACGATGCCAAGACTTTTGCTTGCCTTAACGGCTTCGCATTTGGCTGGTCCGTAAATAACACCTCTGTTAGTCCTGATGGGAGGATGCTTGCAGTCCTTGGGGATACTACAGAGTGCCTGCTTGCGGATGCCAACTCTGGCAAGGTGATTGAGAGCCTCAAAGGGCACTTAGATTACTCTTTTGCTTCTGCCTGGCACCCTGATGGAAATATTTTGGCCACTGGGAACCAAGACACCACCTGCAGGCTGTGGGACATAAGGAATACGTCTAAGTCCCTAGCTGTGCTCAAGGGAAGAATGGGAGCAATCAGATGCGTCAAATTCAGTTTGGATGGTAAATTCCTGTCGATGGCCGAGCCTGCAGATTTCGTCCATATCTATGAAAGTCGCACAGGTTATGAACAAGCACAAGAAATCGATCTGTTTGGGGAAATTGCTGGAATTTCCTTCAGTCCCGACACCGAAGCTCTGTTTGTTGGCGTTGCCGATCGAACCTATGGTAGTGTATTGGAGTTTAACAAACGACACCATAATAAGTACATAGATTCCATCTTCTAG 1692 45.63 MEFVARDDYVDLVNHNCGHKCHPEFTAVIQRRAGNGRFKETGGFAESPRGVPTCSLHVTTPLPFTEPTQSRFRPVPSRSVSAIKATALRDHLFEFPFFVLLICFSSTSVGFACFLAISRLMEHFQNDDLAVNDFDDGGFFSDDEFHTDQNIEHIDSDFEDDMDTSTPKTDTSAFDARNGKDIQGIPWERFAFTRDNYREKRLSQYKNYESLSRSRVELEKECLQVEKGNNFYDFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSPLLRRGKEVLNVAKQIVPTVKRPGVSSQSLSRVQISAMSVKENLIVAGGFQGELICKYLNHPGVAFCTKMTTEENAITNAVDIFHNPNGAMRIITGNNDAKVRIYDAKTFACLNGFAFGWSVNNTSVSPDGRMLAVLGDTTECLLADANSGKVIESLKGHLDYSFASAWHPDGNILATGNQDTTCRLWDIRNTSKSLAVLKGRMGAIRCVKFSLDGKFLSMAEPADFVHIYESRTGYEQAQEIDLFGEIAGISFSPDTEALFVGVADRTYGSVLEFNKRHHNKYIDSIF 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 684200 689898 + CmoCh12G001160.1 Cmo12g00116 392804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00116 563 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 431 466 - -
Cmo12g00116 563 PANTHER OS03G0386000 PROTEIN 121 563 - -
Cmo12g00116 563 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 121 563 - -
Cmo12g00116 563 ProSitePatterns Trp-Asp (WD) repeats signature. 450 464 IPR019775 -
Cmo12g00116 563 Gene3D - 333 560 IPR015943 GO:0005515
Cmo12g00116 563 SUPERFAMILY WD40 repeat-like 310 550 IPR036322 GO:0005515
Cmo12g00116 563 ProSiteProfiles Trp-Asp (WD) repeats profile. 431 472 IPR001680 GO:0005515
Cmo12g00116 563 SMART WD40_4 325 380 IPR001680 GO:0005515
Cmo12g00116 563 SMART WD40_4 424 463 IPR001680 GO:0005515
Cmo12g00116 563 SMART WD40_4 467 506 IPR001680 GO:0005515
Cmo12g00116 563 Pfam WD domain, G-beta repeat 426 463 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00116 - - - csv:101222353 807.749
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g00636 Cmo12g00116 CCT
Cmo05g00510 Cmo12g00116 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01464 Cmo-Chr1:11393597 Cmo12g00116 Cmo-Chr12:684200 0 dispersed
Cmo06g00675 Cmo-Chr6:3404665 Cmo12g00116 Cmo-Chr12:684200 3.26E-157 dispersed
Cmo09g00636 Cmo-Chr9:3188960 Cmo12g00116 Cmo-Chr12:684200 0 dispersed
Cmo12g00116 Cmo-Chr12:684200 Cmo14g01518 Cmo-Chr14:12169070 1.55E-167 dispersed
Cmo12g00116 Cmo-Chr12:684200 Cmo03g00906 Cmo-Chr3:6970358 6.22E-07 wgd
Cmo12g00116 Cmo-Chr12:684200 Cmo05g00510 Cmo-Chr5:2463460 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g386 . Blo12g00699 . Bda03g00499 . Bpe04g00454 . . Cmo05g00510 Cmo12g00116 . . . Car12g00136 . . Cpe07g00123 Bhi04g00741 . . . . . . Cla08g01095 Cam08g1549 Cec08g1122 Cco08g1249 Clacu08g1251 . Cre08g1033 . . . Cone20ag0496 . Csa04g01842 . Cme03g01509 . . . . . . . . . . Cmo09g00636 Cma12g00147 Cma05g00488 Car05g00436 . Cpe11g00427 . . . . . . . . . . . . . . . Lsi08g00951 . Chy07g00699 Cme07g00918
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001293 1 12 1 1 1 1 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 1 2 2 5 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00116 Cmo_Chr12 FPKM 18.021429 18.060938 17.602221 16.056841 15.688441 19.55917 18.166632 24.774422 22.427284 19.570753