Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00129 ATGGCTACCGCCCCCTCTCTTCGCGAGGAGAATGTTTACATGGCCAAGCTTGCTGAGCAGGCCGAGCGCTACGAGGAGATGGTCGAGTTCATGGAGAAGGTTTCCGCTTCTATCGACAAGGAGGAGCTCACCGTCGAGGAGAGGAACCTCCTCTCCGTCGCCTACAAGAACGTCATCGGCGCTCGTAGGGCCTCTTGGCGTATTATTTCCTCCATCGAGCAGAAGGAGGAGAGCCGAGGTAATGATCACCATGTCTCTGTGATCCGTGACTACAGATCCAAAATCGAGAGCGAACTCTCTAATATCTGCGATGGAATTCTCAAACTCCTCGATTCCAGACTCATTCCTTCCGCGGCCTCTGGAGATTCCAAGGTATTTTACCTTAAAATGAAAGGCGATTACCATAGATACCTGGCTGAATTCAAAACCGGTGCCGAACGGAAGGAAGCTGCCGAAAGTACCCTCACTGCTTACAAAGCCGCTCAGGATATTGCAAATGCCGAGTTGCCTCCCACACATCCGATCCGACTTGGATTGGCCCTCAACTTCTCTGTATTCTACTATGAAATTTTGAATTCTCCTGATCGTGCCTGCAGTCTTGCAAAACAGGCGTTTGATGAAGCCATCGCTGAGTTGGATACTCTCGGCGAGGAATCCTACAAGGATAGTACTTTGATTATGCAACTTCTCCGCGATAACCTCACTCTCTGGACCTCGGACATGCAGGACGAGGGTACGGATGAGATCAAAGAAGCTCCCCCCAAGCGCGAGGAAGAAAAGCAGTAA 786 50.76 MATAPSLREENVYMAKLAEQAERYEEMVEFMEKVSASIDKEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDHHVSVIRDYRSKIESELSNICDGILKLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIANAELPPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDEGTDEIKEAPPKREEEKQ 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 795393 797387 + CmoCh12G001290.1 Cmo12g00129 392817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00129 261 Gene3D - 2 251 IPR036815 -
Cmo12g00129 261 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Cmo12g00129 261 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Cmo12g00129 261 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Cmo12g00129 261 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Cmo12g00129 261 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Cmo12g00129 261 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Cmo12g00129 261 PANTHER 14-3-3 PROTEIN 5 253 IPR000308 -
Cmo12g00129 261 Pfam 14-3-3 protein 14 238 IPR023410 -
Cmo12g00129 261 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Cmo12g00129 261 MobiDBLite consensus disorder prediction 241 261 - -
Cmo12g00129 261 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Cmo12g00129 261 SMART 1433_4 8 251 IPR023410 -
Cmo12g00129 261 Coils Coil 7 34 - -
Cmo12g00129 261 SUPERFAMILY 14-3-3 protein 8 240 IPR036815 -
Cmo12g00129 261 PANTHER 14-3-3-LIKE PROTEIN GF14 CHI-RELATED 5 253 - -
Cmo12g00129 261 PIRSF 14-3-3 2 250 IPR000308 -
Cmo12g00129 261 MobiDBLite consensus disorder prediction 243 261 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01661 Cmo12g00129 CCT
Cmo09g00555 Cmo12g00129 CCT
Cmo05g00534 Cmo12g00129 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00475 Cmo-Chr1:2267892 Cmo12g00129 Cmo-Chr12:795393 1.38E-162 dispersed
Cmo12g00129 Cmo-Chr12:795393 Cmo14g01165 Cmo-Chr14:9444790 1.67E-161 dispersed
Cmo01g01661 Cmo-Chr1:12565115 Cmo12g00129 Cmo-Chr12:795393 8.01E-176 wgd
Cmo12g00129 Cmo-Chr12:795393 Cmo05g00534 Cmo-Chr5:2590599 3.79E-180 wgd
Cmo12g00129 Cmo-Chr12:795393 Cmo09g00555 Cmo-Chr9:2651002 9.25E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00129 K06630 - csv:101220164 496.508