Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00135 ATGCCGTCCAGGTACTTTAGAAAAACCGCCATTAGAGAGGAAGAGAGAAAGCTTGAGGCTGAGAGAGAGATGGAGCTCGATGAACACGGCTTCTTAGAGGAGTTGATGGCTCTACGAAGAGAAGCAAATTGGGACGCCATTCCAACTGAAATCACCGATCTCAATGCTTGGGCGTTCGATTACTGTTTTGATCAGAACATTTCTAATGTCAACCCAAATTCTTCATCGGAACCTCTATCGACTCAGAACCTGGATGAATTTTATCATCCTTTGGCAAACGAGTTCTCAGTTCCAGAAATGGCCGATTCCGCCTACGCCGCCATGGAAGTAGCCGCGCCTCTGCCATTTCAAGCAGAGCGTCCGAATGTGGAGGGAGAAGAAGAGGAAGAGGAATTAGGTTTTCTCGCAAACGAGATTCAGAACATGGAGGCGGTTCATGTTCAATCGGCTTGCAAAGCGGAGCCGAATCAGTCTCCAGAACTCCCCGTTTTCAACATTGGAACATGCGCTCTCGAACGGAAGAACGGACCGAAGAAATTACAAGGCCAACCGTCGAAGAATCTGATGGCTGAAAGAAGGAGAAGGAAGCGCTTGAACGATCGCCTCTCAATGCTCAGATCCATCGTTCCTAAGATCAGCAAGATGGACCGAACTGCGATTCTAGCAGATGCAATAGATTACATGAAAGAATTGCTGGAGAAGATCGGAAATCTGCAAAGAGAAATGGATCGAACAAATCAAACGACTAGGAATTCATTCCACGACACAAAACCGAGCGAATTCGTAGTGAGAAATTCACCAAAATTTGAGGTGGAAAGCAGAAACGGAAACACGAGGATCGAGATTTACTGTGCGGCGAAGCCAGGATTACTGTTATCGACGGTGAATACGATCGAAGCATTGGGGCTTGAGATTCAACACTGTGTAATCAGCTGCTTCAATGACTTCGCATTGCAAGCCACTTGTTCGCAGGAACTGAAGCCTGAAGAATTGAAGGAAGCTTTATTTAGAAATGCAGGCTATGGAGGAAGCTGCTTGTAG 1041 46.49 MPSRYFRKTAIREEERKLEAEREMELDEHGFLEELMALRREANWDAIPTEITDLNAWAFDYCFDQNISNVNPNSSSEPLSTQNLDEFYHPLANEFSVPEMADSAYAAMEVAAPLPFQAERPNVEGEEEEEELGFLANEIQNMEAVHVQSACKAEPNQSPELPVFNIGTCALERKNGPKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIDYMKELLEKIGNLQREMDRTNQTTRNSFHDTKPSEFVVRNSPKFEVESRNGNTRIEIYCAAKPGLLLSTVNTIEALGLEIQHCVISCFNDFALQATCSQELKPEELKEALFRNAGYGGSCL 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 844845 846739 - CmoCh12G001350.1 Cmo12g00135 392823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00135 346 CDD ACT_UUR-ACR-like 278 319 - -
Cmo12g00135 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
Cmo12g00135 346 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 25 346 - -
Cmo12g00135 346 Coils Coil 221 248 - -
Cmo12g00135 346 PANTHER - 25 346 - -
Cmo12g00135 346 SMART finulus 188 237 IPR011598 GO:0046983
Cmo12g00135 346 Coils Coil 8 28 - -
Cmo12g00135 346 Gene3D - 178 248 IPR036638 GO:0046983
Cmo12g00135 346 Pfam Helix-loop-helix DNA-binding domain 188 231 IPR011598 GO:0046983
Cmo12g00135 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 248 IPR036638 GO:0046983
Cmo12g00135 346 Coils Coil 125 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01513 Cmo-Chr1:11693656 Cmo12g00135 Cmo-Chr12:844845 2.29E-84 dispersed
Cmo09g00594 Cmo-Chr9:2937102 Cmo12g00135 Cmo-Chr12:844845 1.30E-95 dispersed
Cmo12g00135 Cmo-Chr12:844845 Cmo18g00238 Cmo-Chr18:1579409 2.16E-43 dispersed
Cmo12g00135 Cmo-Chr12:844845 Cmo03g00895 Cmo-Chr3:6930028 1.95E-83 wgd
Cmo12g00135 Cmo-Chr12:844845 Cmo05g00589 Cmo-Chr5:2916192 3.46E-164 wgd
Cmo12g00135 Cmo-Chr12:844845 Cmo07g00598 Cmo-Chr7:2685687 6.23E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10695 PF00010 HLH 6.80E-10 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00135 - - csv:101221329 481.87