Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00137 ATGAAGGGAGGCGATCAGTGGAATCAACACAAACAGGGTGAGATGGAGAACATGGGAAGAACAGGACAGGACAACTTGGTCAGCACCACCTCATCAGGATCTTTGCTGCCGGAGCGGAGGAGATTAACGGCGGAGATGGTGGTTAGAAAAGTCGGCAAATACGAGGTCGGGAGGACGATTGGGGAAGGTACGTTTGCGAAGGTGAAGTTCGCTCAGAATACTGAGACTGGCGGGAGTGTTGCTATGAAAGTTCTCGATCGGAGCACCATAATCAAGCACAAGATGGTTGAACAGATAAAGAAGGAGATTTCTATCATGAAGCTTGTGAGGCACCCTTATGTTGTTCGTCTTCATGAGGTTCTTGCAAGCCGTACGAAGATTTATATAATCTTGGAGTACATAACTGGTGGTGAATTGTTCGACAAAATAGTTCATCATGGACGCCTTAGTGAAGCTGAATCGAGGAGATATTTCCAACAGCTAATTGATGGTGTAGATTATTGCCACAGCAAGGGAGTATATCACAGAGATTTAAAGCCTGAAAATCTGCTACTTGACTCCCTAGGTAATCTAAAGATCTCAGATTTTGGCCTGAGTGCATTGCCCGAACAAGGAGTTAGCCTACTCCGTACGACATGCGGGACTCCAAACTATGTAGCACCAGAGGTGCTCAATCACAAGGGTTATGATGGGGCTATGGCAGATGTTTGGTCCTGTGGGGTAATTCTTTATGTGTTGATGGCAGGATATCTTCCATTTGATGAGCTTGATCTCACCACGTTATATAGTAAGATTGAGAGAGCCGAATTTTCATGTCCATCTTGGTTTCCTGTGGGGGCAAAAGCTTTGATCCATAGAATATTTGACCCCAATCCTTCAACTCGTATTACCATTGAGCAGATCAGAGAGGACGAGTGGTTCATGAAAAATTATGTTTCGGTCAAACATTTCGAAGATGAAGATGTAAATCTGGATGACGTAAATGCTGTCTTCGATGATCCTGAGGAACAAAGGACCGAAGAAGAACGTGGTAACGAGGACATGAGCCCGCTCGCCCTTAATGCATTTGATTTAATAATTCTATCTCAAGGCTTAAACCTCGGAACGATGTTTGACCGTGGCCAGGATACTATGAAGCACCCGACACGCTTCGTCTGCCAAAAGCCCGCAAAGGTTTTATTATCAACTATGGAAGTTGTAGCTCAATCAATGGGTTTCAAGACACACATTCGCAATTACAAGATGAGAGTAGAAGGTCCATCAGCAAGCAAGACTTCTTATTTCTCAGTTATTATGGAAATTTTTGAAGTTGCTCCCACGTTCTTTATGGTGGACATTCAAAAAGCAGCTGGGGAAACCAGCGAGTACCTCAAGTTCTACAAGAGCTTTTATAGCAATCTTGAAGACATCATCTGGAAACCTTCAATCGACACCAGCAAACCAAGAACCGCCAAGAACAAGACTAAAAAACGCTGA 1476 44.04 MKGGDQWNQHKQGEMENMGRTGQDNLVSTTSSGSLLPERRRLTAEMVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGGSVAMKVLDRSTIIKHKMVEQIKKEISIMKLVRHPYVVRLHEVLASRTKIYIILEYITGGELFDKIVHHGRLSEAESRRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNLKISDFGLSALPEQGVSLLRTTCGTPNYVAPEVLNHKGYDGAMADVWSCGVILYVLMAGYLPFDELDLTTLYSKIERAEFSCPSWFPVGAKALIHRIFDPNPSTRITIEQIREDEWFMKNYVSVKHFEDEDVNLDDVNAVFDDPEEQRTEEERGNEDMSPLALNAFDLIILSQGLNLGTMFDRGQDTMKHPTRFVCQKPAKVLLSTMEVVAQSMGFKTHIRNYKMRVEGPSASKTSYFSVIMEIFEVAPTFFMVDIQKAAGETSEYLKFYKSFYSNLEDIIWKPSIDTSKPRTAKNKTKKR 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 856866 865353 + CmoCh12G001370.1 Cmo12g00137 392825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00137 491 Gene3D Transferase(Phosphotransferase) domain 1 134 315 - -
Cmo12g00137 491 CDD CIPK_C 354 469 - -
Cmo12g00137 491 ProSiteProfiles Protein kinase domain profile. 54 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00137 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Cmo12g00137 491 Gene3D Kinase associated domain 1, KA1 347 473 - -
Cmo12g00137 491 ProSiteProfiles NAF domain profile. 348 372 IPR018451 GO:0007165
Cmo12g00137 491 Pfam Protein kinase domain 54 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00137 491 SMART serkin_6 54 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00137 491 Pfam NAF domain 350 408 IPR004041 GO:0007165
Cmo12g00137 491 ProSitePatterns Protein kinases ATP-binding region signature. 60 92 IPR017441 GO:0005524
Cmo12g00137 491 SUPERFAMILY Protein kinase-like (PK-like) 51 308 IPR011009 -
Cmo12g00137 491 PANTHER - 47 488 - -
Cmo12g00137 491 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 47 488 - -
Cmo12g00137 491 Gene3D Phosphorylase Kinase; domain 1 46 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00137 Cmo-Chr12:856866 Cmo13g00546 Cmo-Chr13:6316667 0 dispersed
Cmo10g00582 Cmo-Chr10:2651442 Cmo12g00137 Cmo-Chr12:856866 0 transposed
Cmo12g00137 Cmo-Chr12:856866 Cmo05g00587 Cmo-Chr5:2901096 5.91E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74709 PF00069 Pkinase 1.20E-70 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00137 - - csv:101222107 837.025