Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00144 ATGTGGAACGATTGCCGCGGCGGTTTACCGGGCGCCGACCAGCCACAATTCGATCAAGAATCGTTTATTAACTTTGATTTCTTCTCGGCCACGACTAAACCTAAGGACTATTACAAGACGTTGGAGGTGGATTACGATGCAACTGATGATGATATTCGAGCCAATTACATACGACTTGCTCTGAAATGGCATCCTGACAAGCAGAAAGATCAGGATAATTCCACTTCAAGATTTCAGGAAATAAACGAGGCTTATCAAGTTTTGAGTGATCCCATCAAGAGGAGAGAATACGACATCAAAGACATGCTGTACAAATATGATTACAACGTAGTTGAATATCTCAACCGTTTCAAAGGGCTTATATTGACTTGCAATGGCCTTGGAATTAAGCATTCAATTTGGCCCAAAATTCTCTATGAGACAGCCACCGCGCATCTTTACCAAACGGCGAACGTTGAAAACGCAAATCTCTCTGTCTCCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCCGTCGCTTCAAGCTCGCCGGAGTTCAATAATGGCCGCCACCGTGCCGGACAATCTGTCTCGTGAGCAATATGTGTATCTAGCTAAGCTTGCCGAGCAGGCTGAAAGATATGAGGAGATGGTTCAGTTCATGCAGAAACTTGTTCTTGGTTCAACCCCAGTCGCCGAGCTCTCTGTCGAGGAGCGAAATCTTCTCTCTGTTGCTTACAAGAACGTGATTGGCTCACTTCGAGCTGCTTGGCGGATTGTTTCTTCCATCGAGCAGAAGGAGGAGAGCCGTAAGAATGAAGAGCATGTTGTTCTTGTTAAGGATTATAGATCAAAGGTTGAGTCTGAGCTTTCCGAGGTCTGTGCTAGTATTTTGAAGCTTTTGGACTCGAATCTAATTCCATCGGCATGTGCTAGTGAGTCTAAGGTCTTCTACTTGAAGATGAAGGGGGATTATCATAGGTATATGGCGGAGTTTAAGGCTGGAGATGAGAGGAAAGCTGCTGCTGAGGATGCTATGCTGGCTTATAGGGATGCTCTGGATGTCGCAGTTGCGGATCTTGCACCCACTCATCCGATAAGGCTGGGTCTGGCACTCAATTTCTCTGTGTTTTACTTCGAGATTCTGAATCAGTCCGATAAAGCATGTAGCATGGCCAAGGAGGCATTTGAGGAAGCCATCGCTGAGCTGGACACTTTGGGTGAAGAATCATACAAGGACAGCACCCTCATCATGCAGCTGTTGAGGGACAACCTCACGCTCTGGACTTCAGATGCGCAGGTCGTAACGGTTGTGAGTATTGACTTGTTTGCAGGACCAGTTAGACGAGTCGTAGAAGGCGGCATGAGCTCGACCTGTCCTGTGCTTGTGAATGGTGGGGGAGGAGGAGGTGGGCTTCAAATGTCATTTGCTTATGCTATTATAAATGTGTGA 1449 46.72 MWNDCRGGLPGADQPQFDQESFINFDFFSATTKPKDYYKTLEVDYDATDDDIRANYIRLALKWHPDKQKDQDNSTSRFQEINEAYQVLSDPIKRREYDIKDMLYKYDYNVVEYLNRFKGLILTCNGLGIKHSIWPKILYETATAHLYQTANVENANLSVSVSLSLSLSLSLSLSLYPSLQARRSSIMAATVPDNLSREQYVYLAKLAEQAERYEEMVQFMQKLVLGSTPVAELSVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEESRKNEEHVVLVKDYRSKVESELSEVCASILKLLDSNLIPSACASESKVFYLKMKGDYHRYMAEFKAGDERKAAAEDAMLAYRDALDVAVADLAPTHPIRLGLALNFSVFYFEILNQSDKACSMAKEAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDAQVVTVVSIDLFAGPVRRVVEGGMSSTCPVLVNGGGGGGGLQMSFAYAIINV 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 908622 917557 - CmoCh12G001440.1 Cmo12g00144 392832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00144 482 ProSiteProfiles dnaJ domain profile. 36 101 IPR001623 -
Cmo12g00144 482 PRINTS DnaJ domain signature 73 93 IPR001623 -
Cmo12g00144 482 PRINTS DnaJ domain signature 56 71 IPR001623 -
Cmo12g00144 482 PRINTS DnaJ domain signature 38 56 IPR001623 -
Cmo12g00144 482 ProSitePatterns Nt-dnaJ domain signature. 78 97 IPR018253 -
Cmo12g00144 482 Pfam 14-3-3 protein 203 428 IPR023410 -
Cmo12g00144 482 SMART dnaj_3 35 93 IPR001623 -
Cmo12g00144 482 Coils Coil 203 223 - -
Cmo12g00144 482 PANTHER BNAC02G00320D PROTEIN 194 443 - -
Cmo12g00144 482 SUPERFAMILY Chaperone J-domain 32 120 IPR036869 -
Cmo12g00144 482 ProSitePatterns 14-3-3 proteins signature 1. 238 248 IPR023409 -
Cmo12g00144 482 ProSitePatterns 14-3-3 proteins signature 2. 410 429 IPR023409 -
Cmo12g00144 482 SUPERFAMILY 14-3-3 protein 196 430 IPR036815 -
Cmo12g00144 482 CDD DnaJ 36 90 IPR001623 -
Cmo12g00144 482 Gene3D DnaJ domain 27 111 IPR036869 -
Cmo12g00144 482 Pfam DnaJ domain 36 98 IPR001623 -
Cmo12g00144 482 PRINTS 14-3-3 protein zeta signature 347 373 IPR000308 -
Cmo12g00144 482 PRINTS 14-3-3 protein zeta signature 401 430 IPR000308 -
Cmo12g00144 482 PRINTS 14-3-3 protein zeta signature 312 334 IPR000308 -
Cmo12g00144 482 PRINTS 14-3-3 protein zeta signature 281 305 IPR000308 -
Cmo12g00144 482 PRINTS 14-3-3 protein zeta signature 232 261 IPR000308 -
Cmo12g00144 482 PRINTS 14-3-3 protein zeta signature 374 400 IPR000308 -
Cmo12g00144 482 Gene3D - 178 437 IPR036815 -
Cmo12g00144 482 SMART 1433_4 197 441 IPR023410 -
Cmo12g00144 482 PANTHER 14-3-3 PROTEIN 194 443 IPR000308 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01685 Cmo12g00144 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00144 Cmo-Chr12:908622 Cmo14g01165 Cmo-Chr14:9444790 2.78E-129 dispersed
Cmo19g00287 Cmo-Chr19:2104998 Cmo12g00144 Cmo-Chr12:908622 3.31E-12 dispersed
Cmo05g00585 Cmo-Chr5:2895035 Cmo12g00144 Cmo-Chr12:908622 3.84E-165 transposed
Cmo01g01685 Cmo-Chr1:12699067 Cmo12g00144 Cmo-Chr12:908622 1.09E-56 wgd
Cmo12g00144 Cmo-Chr12:908622 Cmo05g00584 Cmo-Chr5:2890468 4.06E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00144 K06630 - csv:101222827 443.736