Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00147 ATGACTAACCGAAACGCCGAGCCTTTTCAGGGAGAATCCGACGATCCTCCGCCGCCGCCACCTCCTCCTCCGCAGGATCCTGCTGATGGTTCTTGTGCTGGAAACACGGTTTTCAAGAGTGGGCCACTTTTCCTATCATCAAAAGGGATTGGATGGACGTCCTGGAAAAAGAGATGGTTCATCCTAACACGTACTTCACTGGTTTTTTTTCGAAGTGATCCAAATGCTGTTCCTCAGAAAGGGGGTGAGGCGAATTTGACTCTCGGTGGCATTGATCTCAACAATTCAGGCAGTGTTGTTGTGAAAAGTGAAAAAAAACTCTTGACCGTGCTCTTTCCTGATGGTCGAGAAGGACGTGCATTCACACTCAAGGCTGAAACATTGGAGGACCTCTATGAGTGGAAAGCCGCACTGGAAAATGCTTTGGCACAGGCACCCAGTAGTGCCAATGCTAATGGTATCTTGAAGAATGATAAGATGGAACCAAATAATGGGTCTTCAGAGACGTTGAAAGATGGCCAACCACAACCTGGAAGACCCAGAGTCCTTGGTAGGCCAATTTTGCTTGCTTTGGAAGATGTTGATGGAACTCCCTCTTTTCTGGAGAAAGCCCTTAGATTTATAGAAACCCATGGAGTCAAAGTAGAAGGCATTTTGCGACAAGCTGCAGATGTTGACGATGTTGAACATCGTTTGCGGGGATATGAGCAGGGAAAAAACGAGTTTTCTCCAGAAGAAGATGCACATGTAGTGGGTGACTGCGTGAAGTATGTCATCCGGGAGTTACCATCATCTCCAGTTCCAGCATCTTGCTGTAACGCTTTACTAGAAGCAAGCAAAACTGAACGAGGTGGCAGAGTCAATGCTATGCGATCTGCAATATACGAAACCTTTCCAGAACCAAATCGCCGTTTACTGCAGAGAATTCTTATGATGATGCAAACTGTGGCTTCTCATAAAGCTGAGAATCGAATGAGCTCTTCAGCTGTGGCAGCTTGCATGGCCCCCTTACTCCTTCGTCCTCTTTTAGCTGGTGATTGTGAAATTGAAACTGATTTTGACGTGGGGGGTGATGGTTCCATTCAACTTCTTCGTGCAGCTGCCGCAGCAAACCATGCTCAAGCCATAGTTATTACTCTACTGGAGGAGTATGACAAAATTTTTGGGGAAGGTTCTATGTCCCCTATATTATACTCTGATTCAGAAGAGAGTGGAAGTGAGAGCGAGGAGGCAAGTGATGGTGATATGTCTTATGATGATGAAGAACAAGATGATGCTACTGGTTCTGATGTGGCAACAGACGATGAGCTGGAATCAACTGGAACCTGTACTGAGAGTGTCGGCTCTGGGGAGCATGATTTATATGATGATAAGGGTTCTGAAGTATTGAGTACTAGTTCGAAGAATTCCGATATGTGTGATGTAAATGGAATGAAGCCAAAGTCATCAAAGGAGAGAATCCATGACAAAACTGATCGAGGTAGGGGTAGTTCACCAATTAAGGATGAGAAGTCCTGTGAAGTTGAATGTGCATCCGAAAGCTTTGAAGGTTCTCCAACTACATCTAATAAAAGTTCCAACACGACAAAGCGTCTCACCATTTGGGGACGCACGCCTGCAAAGAAGAAACTCTCCTTGGAATCCATTGATTATGATTTCGGCGAAGAGGTTGAGATTCAGAGACTTGAGGCCACTAAATGTGAACTGCAAAATAAAATCGTGGAGGCGGCGCGAGAAAATGCGATTCTCCAATCCAGTTTGGAAAACCGAAAGAAGATCTTGCAAGAGCGTCGTCTAACTCTTGAGCAAGAAGTAGCAAGACTAAGAGAACAGTTGCAAAGGGAGAAAGATCCCTCAGCTAATGTTAGTGAAAAGACAAAGGCAGATCTTGGAGAAAGCAATCGAGGCGAGAAAGACACTGCCAATATAAACAACACAATGGATGAATTTGTAGGACTGCTTAATAGGATACGTGATCAGAAAAGTAACCTACCTGATTTACGTAATGTCTCCCAACAAATGCAGAATCATCAAACAAAATTGAAGGACAAGAGGAAGGATGCTGGAAGTTTAGTCCCTCCTGAACACTCCAGAAATAAGGATGTTCTTTCCGGTCATGCAGAAATAAGTAAACATTCCCCTCTACACCAGCATCTAGATCCTCATAATCCCAGTGCCAAAATAGGTGTATTGGCAACCAATTTCGCAACGGGTCTAACCAATCCTAAGAGGACTGGTGCGAGGATGGAGCTGGGACCAAATCACAATTCTTCAGCACTGACGAAACTGACGACCAGACTCAACTTCTTGAAGGAGCGTCGCAGCCAGATAGCAAATGAACTCCAGAATATGGACCGGGGACGAGTTTCGGGCCAATCAACCGACGGTTCTGAAAAGGGCAGGGGAGTTGAAGCTCAGCGCTCAGTCCAAAACTCAGATGACACTAAAGGGTCTGCTGACAATCTCCAATCCATTCAGGACTTCGATAAGCGAGCGGGAAGCCAAGGCAGCCAGCCCCAAAAATCAGATGCCAGATAA 2538 45.47 MTNRNAEPFQGESDDPPPPPPPPPQDPADGSCAGNTVFKSGPLFLSSKGIGWTSWKKRWFILTRTSLVFFRSDPNAVPQKGGEANLTLGGIDLNNSGSVVVKSEKKLLTVLFPDGREGRAFTLKAETLEDLYEWKAALENALAQAPSSANANGILKNDKMEPNNGSSETLKDGQPQPGRPRVLGRPILLALEDVDGTPSFLEKALRFIETHGVKVEGILRQAADVDDVEHRLRGYEQGKNEFSPEEDAHVVGDCVKYVIRELPSSPVPASCCNALLEASKTERGGRVNAMRSAIYETFPEPNRRLLQRILMMMQTVASHKAENRMSSSAVAACMAPLLLRPLLAGDCEIETDFDVGGDGSIQLLRAAAAANHAQAIVITLLEEYDKIFGEGSMSPILYSDSEESGSESEEASDGDMSYDDEEQDDATGSDVATDDELESTGTCTESVGSGEHDLYDDKGSEVLSTSSKNSDMCDVNGMKPKSSKERIHDKTDRGRGSSPIKDEKSCEVECASESFEGSPTTSNKSSNTTKRLTIWGRTPAKKKLSLESIDYDFGEEVEIQRLEATKCELQNKIVEAARENAILQSSLENRKKILQERRLTLEQEVARLREQLQREKDPSANVSEKTKADLGESNRGEKDTANINNTMDEFVGLLNRIRDQKSNLPDLRNVSQQMQNHQTKLKDKRKDAGSLVPPEHSRNKDVLSGHAEISKHSPLHQHLDPHNPSAKIGVLATNFATGLTNPKRTGARMELGPNHNSSALTKLTTRLNFLKERRSQIANELQNMDRGRVSGQSTDGSEKGRGVEAQRSVQNSDDTKGSADNLQSIQDFDKRAGSQGSQPQKSDAR 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 933431 951518 + CmoCh12G001470.1 Cmo12g00147 392835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00147 845 Pfam RhoGAP domain 198 341 IPR000198 GO:0007165
Cmo12g00147 845 MobiDBLite consensus disorder prediction 12 28 - -
Cmo12g00147 845 MobiDBLite consensus disorder prediction 678 703 - -
Cmo12g00147 845 MobiDBLite consensus disorder prediction 395 506 - -
Cmo12g00147 845 MobiDBLite consensus disorder prediction 1 33 - -
Cmo12g00147 845 MobiDBLite consensus disorder prediction 152 181 - -
Cmo12g00147 845 MobiDBLite consensus disorder prediction 611 636 - -
Cmo12g00147 845 CDD RhoGAP 198 336 - -
Cmo12g00147 845 Coils Coil 584 611 - -
Cmo12g00147 845 MobiDBLite consensus disorder prediction 778 845 - -
Cmo12g00147 845 SMART PH_update 37 145 IPR001849 -
Cmo12g00147 845 SMART RhoGAP_3 195 385 IPR000198 GO:0007165
Cmo12g00147 845 SUPERFAMILY GTPase activation domain, GAP 197 390 IPR008936 GO:0007165
Cmo12g00147 845 PANTHER RHO GTPASE-ACTIVATING PROTEIN REN1 7 790 - -
Cmo12g00147 845 ProSiteProfiles Rho GTPase-activating proteins domain profile. 189 388 IPR000198 GO:0007165
Cmo12g00147 845 SUPERFAMILY PH domain-like 14 143 - -
Cmo12g00147 845 MobiDBLite consensus disorder prediction 478 506 - -
Cmo12g00147 845 MobiDBLite consensus disorder prediction 403 432 - -
Cmo12g00147 845 MobiDBLite consensus disorder prediction 152 173 - -
Cmo12g00147 845 Pfam PH domain 38 142 IPR001849 -
Cmo12g00147 845 Coils Coil 760 780 - -
Cmo12g00147 845 Coils Coil 844 845 - -
Cmo12g00147 845 MobiDBLite consensus disorder prediction 668 703 - -
Cmo12g00147 845 MobiDBLite consensus disorder prediction 611 643 - -
Cmo12g00147 845 PANTHER RHO GTPASE-ACTIVATING PROTEIN 7 7 790 - -
Cmo12g00147 845 Coils Coil 667 687 - -
Cmo12g00147 845 MobiDBLite consensus disorder prediction 433 447 - -
Cmo12g00147 845 Gene3D - 28 144 IPR011993 -
Cmo12g00147 845 Gene3D Rho GTPase activation protein 168 389 IPR008936 GO:0007165
Cmo12g00147 845 ProSiteProfiles PH domain profile. 36 143 IPR001849 -
Cmo12g00147 845 CDD PH 39 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00147 - - - cmax:111495950 1589.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00925 Cmo-Chr10:4599606 Cmo12g00147 Cmo-Chr12:933431 0 dispersed
Cmo11g00900 Cmo-Chr11:4599539 Cmo12g00147 Cmo-Chr12:933431 0 dispersed
Cmo12g00147 Cmo-Chr12:933431 Cmo05g00581 Cmo-Chr5:2868049 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g493 . . . . . . . . . Cmo12g00147 . . . Car12g00172 . . Cpe07g00160 . . . . . . . . . . . . . . Cone4ag1303 . . . . . . . . . . . Bpe02g01158 . . . . . . Cma12g00190 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003403 0 1 1 0 1 1 2 1 2 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 12 4 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00147 Cmo_Chr12 FPKM 58.516281 65.401085 30.275177 29.201204 11.746002 11.512826 10.977323 32.678539 31.810566 34.693115