Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00148 ATGACTACGGATCTCGGATGCGTGATCGTGGCCGTCGATGGCAGCGAGGAAAGCATGAGCGCGTTACGGTGGGCGCTTCAAAATCTCAAGCTCCGGCCATCGGCGCCGGGCGTCACTGACAGCACTTTTATTGTGCTGCATGTTCAACCTCCTCCTTCAATCGCCGCCGGTCTCAGTCCTGCTCCAATCCCCTTTGGTGGTCCTACCGATCTGGAGGTTCCTGCTTTCACTGCAGCGATCGAGTCGCATCAGAAGCGGATTACGGCTGCGATATTGGAACATGCTTCACGGATTTGCGCCGAGTACAAGATGAACGTGGAAACAAAAGTAGCAATCGGAGATCCAAAGGATAAGATCTGTGAAGTGGCTGAGAATTTGCATGCTGATTTGCTAGTTATGGGATCCCGTGCCTTTGGTCCTATCAAAAGGATGTTCTTGGGAAGTGTAAGCAACTATTGCACCAATCATGTGGAATGCCCAGTCATCGTAGTCAAGGACAAGTTAAAGGGCATTTTTTTTTTGTTAAGCGTGCCTGTTCGACGCTCACCGACATGTCTTATCATCAATTGGATTCCTTTTCTACTATTTTATAATGTTCATAAGCGTTGCAGTTTCTTGTGCATGCCACATCATGCAGCCATATTCATTCTCATCGTCGAGTTTCCAAAACGGTCTAAAAGCTGGTTTGAATCTCTTTTTGTTACAGATGTTTGA 714 47.48 MTTDLGCVIVAVDGSEESMSALRWALQNLKLRPSAPGVTDSTFIVLHVQPPPSIAAGLSPAPIPFGGPTDLEVPAFTAAIESHQKRITAAILEHASRICAEYKMNVETKVAIGDPKDKICEVAENLHADLLVMGSRAFGPIKRMFLGSVSNYCTNHVECPVIVVKDKLKGIFFLLSVPVRRSPTCLIINWIPFLLFYNVHKRCSFLCMPHHAAIFILIVEFPKRSKSWFESLFVTDV 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 957708 961841 - CmoCh12G001480.1 Cmo12g00148 392836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00148 237 CDD USP_Like 8 164 - -
Cmo12g00148 237 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 167 - -
Cmo12g00148 237 Pfam Universal stress protein family 8 165 IPR006016 -
Cmo12g00148 237 PRINTS Universal stress protein signature 125 137 IPR006015 -
Cmo12g00148 237 PRINTS Universal stress protein signature 5 23 IPR006015 -
Cmo12g00148 237 PRINTS Universal stress protein signature 143 165 IPR006015 -
Cmo12g00148 237 Gene3D HUPs 2 170 IPR014729 -
Cmo12g00148 237 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 3 166 - -
Cmo12g00148 237 PANTHER OS02G0760500 PROTEIN 3 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00148 - - - csv:101203754 298.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02832 Cmo-Chr4:20259451 Cmo12g00148 Cmo-Chr12:957708 8.52E-19 dispersed
Cmo12g00148 Cmo-Chr12:957708 Cmo17g01065 Cmo-Chr17:8887828 9.88E-21 dispersed
Cmo15g00789 Cmo-Chr15:3873600 Cmo12g00148 Cmo-Chr12:957708 8.67E-18 dispersed
Cmo05g01092 Cmo-Chr5:8735922 Cmo12g00148 Cmo-Chr12:957708 1.19E-33 transposed
Cmo14g00953 Cmo-Chr14:5084534 Cmo12g00148 Cmo-Chr12:957708 2.41E-25 transposed
Cmo18g01020 Cmo-Chr18:11027572 Cmo12g00148 Cmo-Chr12:957708 1.70E-27 transposed
Cmo12g00148 Cmo-Chr12:957708 Cmo05g00578 Cmo-Chr5:2856532 2.19E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g498 . . Bda01g00914 . . . . . . Cmo12g00148 . . . Car12g00175 . . Cpe07g00163 . . . . . . . . . . . . . . . Cone7ag0852 . . . . . . . . . . Bpe02g01155 . . Bma02g00108 . . . Cma12g00194 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004387 2 3 2 2 2 2 2 1 1 1 1 0 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 2 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00148 Cmo_Chr12 FPKM 181.6465 206.176392 190.495422 196.93045 174.884995 179.017334 170.268906 120.251747 121.193733 125.246605