Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00151 ATGGCGAGGGAGAAGATCAAGATTAAGAAGATCAGCAACTTAACGGCGAGGCAAGTGACGTTTTCGAAGCGACGGCGAGGGCTTTTCAAGAAGGCGGAGGAGTTGTCGGTGCTCTGCGACGCCGAGGTGGCGCTGCTCGTCTTCTCCGCTACCGGAAAGCTCTTCGAGTTTTCCAGTTCCAGCGTTAAGGATGTTATTACAAGATACAATTTGCACTCCACTAACCTTGGAGAGTTGGAAGATCCCTCCCTTGACCTACAGCTCGAGAATAGCAGCCACGCTCGGTTGACCAAGGAAGCTGCAGACATGAGCCATCGACTGAGGCAGATGAGAGGAGAGGATCTTCAAGGATTGAATTTAGAAGATTTGAAGCAATTGGAAGGAGTGCTTGAAGTAGGCCTCGCTCGTGTTATTCAAACCAAGGAAAGGAAGATTATGAATGAAATTAATGCGCTTGAGCTTAAGGGAGCCAGATTGATGGAAGAGAACAGGACGCTGAATCGGCAGATGATAAGGTTGTCGAATCAAAGAAGGCCACTGCTGGTAGTTTCCGACGTTCCGGTGCCGGAAGAAGGAGTTTCGTCGGACTCCGCCGCAAATGTGTACAGCTGCAACAGCGGCCCTCTCGCCGACGACGACAGCTCCGATACCTCTCTCAAACTAGGGCTTGCATGCCCAAATTGA 684 50.73 MAREKIKIKKISNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALLVFSATGKLFEFSSSSVKDVITRYNLHSTNLGELEDPSLDLQLENSSHARLTKEAADMSHRLRQMRGEDLQGLNLEDLKQLEGVLEVGLARVIQTKERKIMNEINALELKGARLMEENRTLNRQMIRLSNQRRPLLVVSDVPVPEEGVSSDSAANVYSCNSGPLADDDSSDTSLKLGLACPN 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 982096 985704 + CmoCh12G001510.1 Cmo12g00151 392839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00151 227 Coils Coil 149 176 - -
Cmo12g00151 227 Coils Coil 93 113 - -
Cmo12g00151 227 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 221 - -
Cmo12g00151 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo12g00151 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo12g00151 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo12g00151 227 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo12g00151 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo12g00151 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo12g00151 227 SUPERFAMILY SRF-like 3 72 IPR036879 GO:0003677|GO:0046983
Cmo12g00151 227 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Cmo12g00151 227 Pfam K-box region 92 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo12g00151 227 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Cmo12g00151 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo12g00151 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Cmo12g00151 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00881 Cmo-Chr3:6865695 Cmo12g00151 Cmo-Chr12:982096 3.87E-84 dispersed
Cmo07g00577 Cmo-Chr7:2614037 Cmo12g00151 Cmo-Chr12:982096 4.05E-07 dispersed
Cmo07g01235 Cmo-Chr7:6747714 Cmo12g00151 Cmo-Chr12:982096 9.18E-61 dispersed
Cmo12g00151 Cmo-Chr12:982096 Cmo19g00492 Cmo-Chr19:5857286 1.25E-55 dispersed
Cmo12g00151 Cmo-Chr12:982096 Cmo07g00576 Cmo-Chr7:2610497 3.24E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10696 PF01486 K-box 3.90E-14 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00151 - - csv:101213234 334.339