Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00152 ATGAACGACGCCTCTGTCAAAGGCCTCGAAGTCTTCGATTTCACCGAAGAAGACGAGCTTCCTGAATTGATCTCCGAGAAGTGTCTCAGCAAATTCAAAAACCCTAATCTCGAAACTAACTCTGTTTTGAAGTATGGATGTCTTGAATTAGGGAAAGAGGTTGAAAATCCACATATGGATGTTGACTTGGATGAATGTAATCGTGGTTGTGACAATGGTATTTCACATATCCCCCCGGGCATATCTAAAGAGCAATTGATCATGGAAGAAGAGAAATATCAATTGGATGTCAATACAGAATCAGAATGGAATACTCATTCACAAGACATGTTTGTGCAAGTAAATAATCACGTGACAGGATGCTTTGGCTCTGAGCTTGGAAAAGTTGGATCTAGCTCTCAAAGTTCTATCCTGGGGTTAAATTGCTCTCTTCCTGAGTTTGCCGCTAAAAGGGAGCAAGTGGATGCACTTTCATATCCTAATGGAAGCATGAATGGGAGTTCTCCAATGAGCTCTCCTTCGGAGCTTGTAGAGGATAGTGTTTCGCCGAATGGGAAGTCTTCAGATAAGTGCTCATCTGACAATGAAATGGATGATCTTAACCAAGAGGTTGTTCTATGTCCCGATTATATTATATATGGAGATTCTTACTGTACCAGTTCGCAGTTAACCTTTTCACATAATGGCGTCAAAATTAATGGTTTTTCTGATTATGGAAGCAACGAGTTCCTTAACCTTGAATGGGGAGTTGATGATCTCATTAATATTGAGTGTCATTGGTTTCAAAGGGTTGAATTTGTGACGATTAAGCTCCATACTATATCAAAGGATGTTGGTCAACGTGATAATGGATGTGACACTTCTGGCCTTAAGGAAGTGAAGATTGTTCTAGTTGATCCTTGCTGGTCTGAGAAACAACAAAAAATCAGATCTTTGGATTCCAGATACATGGCTATTTGGAATATGTCTCTTGACTTTGATGAGCATTTTGAAGAAGTTGTCTATCCCAAAGGAGATCCAGATGCCGTTTCCATTAGTAAGAGGGATGTTGACTTGTTGCAACCAGAGACATTTGTCAATGATACAATCATTGACTTTTACATCCAGTATTTGAAGAGCCAGATAGACCCTAAGGAGAAGCATAGATTTCACTTCTTCAATAGCTTTTTCTTTAGGAAGCTAGCTGACCTTGATAAAGATCCCTCAAGTGCTTCTGATGGCAAAGCTGCTTTTCTTCGTGTTCGAAAATGGACTCGGAAAGTGAATTTATTTGACAAGGATTATATCTTCATTCCTATAAACTTCAACCTTCATTGGAGCTTAATGGTCATATGCCATCCTGGTGAAGTGGCTAGATATAGCGATGAAAACCTGATGAAGTCAACAAAAGTACCGTGTATATTGCATATGGATTCTATTAAGGGAAGTCACGCAGGCCTTAAAAATCTCATTCAAAGTTATTTGCTGGAAGAATGGAACGAAAGAAACAAGGATGCATCTGAAGATATTTCATCAAAGTTTAAGAACCTTCGGTTTCTCCCACTCGAGCTTCCACAGCAGGAAAATTCATTTGATTGCGGATTATTTTTGCTCCACTATCTAGAACTCTTTTTGGCAGAAGCTCCTCTTGATTTCAGTCCGTTCAAAATCTCCAAGCTTTCAAAATTTCTTAATGTGGATTGGTTCCCACCTGCTGAGGCTTACCTCAAGCGAACTTTAATACAGAGATTAATTTTTGAAATCCTTGAAAAACGATCTCGACAAATGTCCACCACTGCTTGCAGTGATGATCTCCTTTCTAAATTTCCATCAAACAATGAGGATGAAGCTGGTGTGGAGCTTGTTCCGGAAAGTGGAAGACTGGCAGAGACATTCAATCACAATTTGTCAAGCTCACAAGCTGCTGATGGGATTGAAATTACTCTGTTATCTGAATCTTCGAGTAGACATAACCACTTTATGGACGGTTCTGGCTTGGTTGTCAGAGAACTATTTGAACCAGGCACATCGAATGGATCATTACTTGGACACTATCAATCTTTTGCCCAGACATCATCGTATTTTGATACAAATGTTACCGTGTTGGAGGAAGATGCAGATACGGAAACTGGAGACCGTTTCATGTACTTGCCTTCAGAACAGGATGGTTTGCAGCCAGTTGATGCAATGACATCTCAAGCTTGTCGTTTTCCGGGTTCGTCAAGAGGCCTAGAATCCGAGACTGCTTTTGACTTGTGCATGTCTATTCAACCAGAGCATGGTAGTGGCATTGCCTCATCCCCCTCAAGTCACTCAGATGTCTTAGAAGATGTGGGAATCATTGAAAGTTGCGATGTTAGGGAACCAAGCCCTGGTAACAAAGAAGAAATTAACAGAAAAAGGCCCTTACCAATTGAGAACCTGGAACCTATAGCAGAATGCCCCACTTCTGCTGCTACCACGACGCAAGATACCGACACCATTGTCGTTTCTAAAGATACTAATGATACTTGTGAAGACATGGAAAATGATGGTTCTGATCCTCATTGTAAAGAAACTGTCGTTGCATCACCGTGTCTAGATGAGGATATAACAACCAAAACAGACATCGAACATGATGATGCAGTGTTGGTTGCTTCGGTTACTGAGGTCGACTTACACGAGCAACCTCCAGCCAAGAAATCGAGGCATTTGCCATACCCCGAAGAAGCAAGCAACGGTCTCGGAGACGTTCTGCTAGAGGATGCAGACTTATAA 2736 41.01 MNDASVKGLEVFDFTEEDELPELISEKCLSKFKNPNLETNSVLKYGCLELGKEVENPHMDVDLDECNRGCDNGISHIPPGISKEQLIMEEEKYQLDVNTESEWNTHSQDMFVQVNNHVTGCFGSELGKVGSSSQSSILGLNCSLPEFAAKREQVDALSYPNGSMNGSSPMSSPSELVEDSVSPNGKSSDKCSSDNEMDDLNQEVVLCPDYIIYGDSYCTSSQLTFSHNGVKINGFSDYGSNEFLNLEWGVDDLINIECHWFQRVEFVTIKLHTISKDVGQRDNGCDTSGLKEVKIVLVDPCWSEKQQKIRSLDSRYMAIWNMSLDFDEHFEEVVYPKGDPDAVSISKRDVDLLQPETFVNDTIIDFYIQYLKSQIDPKEKHRFHFFNSFFFRKLADLDKDPSSASDGKAAFLRVRKWTRKVNLFDKDYIFIPINFNLHWSLMVICHPGEVARYSDENLMKSTKVPCILHMDSIKGSHAGLKNLIQSYLLEEWNERNKDASEDISSKFKNLRFLPLELPQQENSFDCGLFLLHYLELFLAEAPLDFSPFKISKLSKFLNVDWFPPAEAYLKRTLIQRLIFEILEKRSRQMSTTACSDDLLSKFPSNNEDEAGVELVPESGRLAETFNHNLSSSQAADGIEITLLSESSSRHNHFMDGSGLVVRELFEPGTSNGSLLGHYQSFAQTSSYFDTNVTVLEEDADTETGDRFMYLPSEQDGLQPVDAMTSQACRFPGSSRGLESETAFDLCMSIQPEHGSGIASSPSSHSDVLEDVGIIESCDVREPSPGNKEEINRKRPLPIENLEPIAECPTSAATTTQDTDTIVVSKDTNDTCEDMENDGSDPHCKETVVASPCLDEDITTKTDIEHDDAVLVASVTEVDLHEQPPAKKSRHLPYPEEASNGLGDVLLEDADL 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 986368 995113 + CmoCh12G001520.1 Cmo12g00152 392840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00152 911 MobiDBLite consensus disorder prediction 158 190 - -
Cmo12g00152 911 MobiDBLite consensus disorder prediction 158 195 - -
Cmo12g00152 911 Gene3D - 335 579 - -
Cmo12g00152 911 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 8 866 - -
Cmo12g00152 911 ProSiteProfiles Ubiquitin-like protease family profile. 343 537 IPR003653 GO:0006508|GO:0008234
Cmo12g00152 911 SUPERFAMILY Cysteine proteinases 335 579 IPR038765 -
Cmo12g00152 911 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 8 866 - -
Cmo12g00152 911 Pfam Ulp1 protease family, C-terminal catalytic domain 358 547 IPR003653 GO:0006508|GO:0008234
Cmo12g00152 911 MobiDBLite consensus disorder prediction 879 911 - -
Cmo12g00152 911 Gene3D - 383 514 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00152 K08596 SENP7; sentrin-specific protease 7 [EC:3.4.22.68] - csv:101206097 1333.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01811 Cmo-Chr4:9126058 Cmo12g00152 Cmo-Chr12:986368 1.91E-27 dispersed
Cmo12g00152 Cmo-Chr12:986368 Cmo18g00806 Cmo-Chr18:9501803 1.54E-38 dispersed
Cmo18g00191 Cmo-Chr18:1291926 Cmo12g00152 Cmo-Chr12:986368 2.30E-16 transposed
Cmo12g00152 Cmo-Chr12:986368 Cmo05g00574 Cmo-Chr5:2816712 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g511 . . . . . . . . . Cmo12g00152 . . . Car12g00180 . . Cpe07g00168 . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01358 Bpe02g01149 . . Bma02g00113 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001964 1 5 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 4 2 2 2 2 2 2 2 2 1 3 5 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00152 Cmo_Chr12 FPKM 0.439451 0.0 0.0 0.0 0.665205 0.297245 0.434478 0.0 0.0 0.0