Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00153 ATGGTTCATGCTGGTTCTACACAATTTTCGCATAAACTGGGGATTCAAAGCGTTCATGGATGCAATAAGTTACATATTAGTGGCAAGGGAAAGACCAGGCGACATCTTGTTACTATCATTCCTACATCACACGATCTGAGGTATGATCCTGGACGTCTTCAGCTCTTACGCAGTGCAAGTCAGCCAGTGTATCCCATGTCTTCCAGAGCAAATGTTTTGGTGTGTCGATCTGTTCTTGAATCAAGTGGTGGAGGAGCTGGGACTGCTGTTCTAAAAACTGCAGCTTTGGTGCTGACAAGATCTTATGATGCTTTACGCGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGCGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGGTTCTATTTCTTCATGAGCCCGATGGCAGTTGGAAGAAAAGTAATGCATACTATGTTACGACTTCCTACGTTCAGCCTTTACTGCTATGGATGGGAGCCACATTGATCTGCAGGGCTTTGGATCCAGTAGTTTTACCGTCAGTAGCCAGTCAGGCCATCAAACAGCGACTTCTAAATTTTGTTCGAGCTTTGTCTACTGTTCTGGCATTTGCCTATTGTATATCAAGCTTGATTCAACAAGTACAAAAATTCGCTACGGAATCAAATGACTCAAGTGATGCTAGAAATATGGGCTTTGATTTTGCGGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTAGGTTTTTCTACCCAAAAGTGGCTCACGGCTGGGGGTCTTGGTACTGTATTACTTACCCTTGCTGGTCGTGAGATATTTACTAACTTTCTCTCAAGTGTAATGATTCATGCAACACGACCATTTGTGGTAAATGAATGGATTCAGACAAAGATTGATGGATATGAAGTTTCTGGAACGGTTGAGCACGTTGGTTGGTGGTCGCCGACTATTATCCGAGGCGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTCACCGTTAGTATTGTGAGAAATCTTACTCAGAAGACTCATTGGCGTATCAAAACTCATCTTGCCATCAGCCACTTAGATGTCAACAAGATTAATTATATTGTAGCTGATATGCGGAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGTAGAATCTTCTTGGACAACATCAATCCTGAAAACCAGGCTCTTATGATTATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAGTACTTGTGCGTAAAGGAGGCAATTCTCTTGGACCTTCTCAGGGTTATCAGCCACCATAGGGCCCGGCTTGCCACTCCCATACGCACTGTTCAGAAAATATATGGTGAGGCTGACTTGGAGAATGTACCATTTTCAGAGACCATGTATTCTCGTACAGGGGCTACTAACCGCCCTCTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGACGATAAAGCCAAAGTCTCTGGACGTCCCGCTCGCTCGTCAAGCGAAGAAAAAGATGCCAAACAAGAGGCAGTCTCAACATCAGGAACGAAAGCCCCCGACACATCAGGAACAGCGCCTAAGCCTTCAACTGGACTGGTATCCAACACACAGACCCAGAATCCAACCAGTACTCCAGAACAAAGCAGCATTGAGAAGCCAGTAACAAGCAATGAGGTAAAAGGAGAAAAGAAAGAGCTCTCAGGATTGAACGCTAAGGATAATACGCCACGAGGGACTCCTCCCAAATGGTCGCCCTCAGCTGCCGGTCCGAGTAGCGAGAAAGCTGATATATCTTCCTCAAGCGTGCAGAATAAGCAAGATGGCGAGAAGACCCCTGTGGGCAGACCTCCATTGGAGGAGAACATTGTCCTGGGAGTTGCCTTGGAAGGCTCCAAAAGAACTCTTCCAATAGAGGAAGATCTGAATCCATCTCCCTTTCACTCTCCAGCTGATACAAAAGAAATTTCGACACAGAGGAATGGGAGTGAGTTTGGTCCAAAGAGCAAGGATATGAAAGATGGGCAGATGCCTGCAGTTCCAGGTGGTACAAAAAGTGATTGA 2094 44.99 MVHAGSTQFSHKLGIQSVHGCNKLHISGKGKTRRHLVTIIPTSHDLRYDPGRLQLLRSASQPVYPMSSRANVLVCRSVLESSGGGAGTAVLKTAALVLTRSYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRVLFLHEPDGSWKKSNAYYVTTSYVQPLLLWMGATLICRALDPVVLPSVASQAIKQRLLNFVRALSTVLAFAYCISSLIQQVQKFATESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNINPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRTGATNRPLLLIEPSYKVNGDDKAKVSGRPARSSSEEKDAKQEAVSTSGTKAPDTSGTAPKPSTGLVSNTQTQNPTSTPEQSSIEKPVTSNEVKGEKKELSGLNAKDNTPRGTPPKWSPSAAGPSSEKADISSSSVQNKQDGEKTPVGRPPLEENIVLGVALEGSKRTLPIEEDLNPSPFHSPADTKEISTQRNGSEFGPKSKDMKDGQMPAVPGGTKSD 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 995821 1001555 - CmoCh12G001530.1 Cmo12g00153 392841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00153 697 MobiDBLite consensus disorder prediction 522 566 - -
Cmo12g00153 697 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Cmo12g00153 697 Gene3D - 299 354 IPR023408 -
Cmo12g00153 697 Gene3D - 193 297 - -
Cmo12g00153 697 MobiDBLite consensus disorder prediction 497 521 - -
Cmo12g00153 697 MobiDBLite consensus disorder prediction 497 697 - -
Cmo12g00153 697 MobiDBLite consensus disorder prediction 660 675 - -
Cmo12g00153 697 MobiDBLite consensus disorder prediction 602 619 - -
Cmo12g00153 697 Pfam Mechanosensitive ion channel 240 447 IPR006685 GO:0016020|GO:0055085
Cmo12g00153 697 MobiDBLite consensus disorder prediction 567 581 - -
Cmo12g00153 697 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 689 - -
Cmo12g00153 697 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 689 IPR045042 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00153 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101213477 1172.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00153 Cmo-Chr12:995821 Cmo16g00807 Cmo-Chr16:4154484 0 dispersed
Cmo12g00153 Cmo-Chr12:995821 Cmo05g00572 Cmo-Chr5:2804121 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g513 . . . . . . . . . Cmo12g00153 . . . . . . Cpe07g00169 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00199 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo12g00881 . 149 501 Mechanosensitive Ion Channel Family AT4G00290 63.0 5.9e-133 471.9
Cmo16g00807 . 24 726 Mechanosensitive Ion Channel Family AT5G10490 56.4 9.3e-198 687.6
Cmo12g00153 . 61 686 Mechanosensitive Ion Channel Family AT5G10490 59.0 2.6e-192 669.5
Cmo05g00572 . 10 706 Mechanosensitive Ion Channel Family AT5G10490 55.2 1.4e-190 663.7
Cmo05g00572 . 10 686 Mechanosensitive Ion Channel Family AT1G58200 57.1 9.1e-201 697.6
Cmo12g00153 . 10 651 Mechanosensitive Ion Channel Family AT1G58200 55.5 2.1e-189 659.8
Cmo16g00807 . 6 695 Mechanosensitive Ion Channel Family AT1G58200 51.8 2.7e-176 616.3
Cmo20g00729 . 50 938 Mechanosensitive Ion Channel Family AT1G53470 56.0 1.7e-263 906.4
Cmo20g00729 . 50 933 Mechanosensitive Ion Channel Family AT3G14810 52.7 3.0e-246 849.0
Cmo20g00729 . 50 938 Mechanosensitive Ion Channel Family AT1G78610 59.0 2.2e-284 975.7
Cmo20g00729 . 252 933 Mechanosensitive Ion Channel Family AT2G17000 61.0 3.8e-233 805.4
Cmo11g01757 . 270 793 Mechanosensitive Ion Channel Family AT2G17000 53.8 1.2e-141 501.5
Cmo01g01806 . 69 720 Mechanosensitive Ion Channel Family AT5G19520 50.4 1.4e-173 607.4
Cmo10g00779 CST 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.3 1.7e-200 696.8
Cmo01g01806 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.4 1.5e-188 657.1
Cmo11g00734 CST 59 752 Mechanosensitive Ion Channel Family AT5G12080 51.0 1.7e-184 643.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00153 Cmo_Chr12 FPKM 43.397251 52.813942 19.19664 19.673315 46.275852 38.403706 45.487095 30.121323 29.889475 29.138777