Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00153 ATGGTTCATGCTGGTTCTACACAATTTTCGCATAAACTGGGGATTCAAAGCGTTCATGGATGCAATAAGTTACATATTAGTGGCAAGGGAAAGACCAGGCGACATCTTGTTACTATCATTCCTACATCACACGATCTGAGGTATGATCCTGGACGTCTTCAGCTCTTACGCAGTGCAAGTCAGCCAGTGTATCCCATGTCTTCCAGAGCAAATGTTTTGGTGTGTCGATCTGTTCTTGAATCAAGTGGTGGAGGAGCTGGGACTGCTGTTCTAAAAACTGCAGCTTTGGTGCTGACAAGATCTTATGATGCTTTACGCGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGCGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGGTTCTATTTCTTCATGAGCCCGATGGCAGTTGGAAGAAAAGTAATGCATACTATGTTACGACTTCCTACGTTCAGCCTTTACTGCTATGGATGGGAGCCACATTGATCTGCAGGGCTTTGGATCCAGTAGTTTTACCGTCAGTAGCCAGTCAGGCCATCAAACAGCGACTTCTAAATTTTGTTCGAGCTTTGTCTACTGTTCTGGCATTTGCCTATTGTATATCAAGCTTGATTCAACAAGTACAAAAATTCGCTACGGAATCAAATGACTCAAGTGATGCTAGAAATATGGGCTTTGATTTTGCGGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTAGGTTTTTCTACCCAAAAGTGGCTCACGGCTGGGGGTCTTGGTACTGTATTACTTACCCTTGCTGGTCGTGAGATATTTACTAACTTTCTCTCAAGTGTAATGATTCATGCAACACGACCATTTGTGGTAAATGAATGGATTCAGACAAAGATTGATGGATATGAAGTTTCTGGAACGGTTGAGCACGTTGGTTGGTGGTCGCCGACTATTATCCGAGGCGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTCACCGTTAGTATTGTGAGAAATCTTACTCAGAAGACTCATTGGCGTATCAAAACTCATCTTGCCATCAGCCACTTAGATGTCAACAAGATTAATTATATTGTAGCTGATATGCGGAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGTAGAATCTTCTTGGACAACATCAATCCTGAAAACCAGGCTCTTATGATTATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAGTACTTGTGCGTAAAGGAGGCAATTCTCTTGGACCTTCTCAGGGTTATCAGCCACCATAGGGCCCGGCTTGCCACTCCCATACGCACTGTTCAGAAAATATATGGTGAGGCTGACTTGGAGAATGTACCATTTTCAGAGACCATGTATTCTCGTACAGGGGCTACTAACCGCCCTCTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGACGATAAAGCCAAAGTCTCTGGACGTCCCGCTCGCTCGTCAAGCGAAGAAAAAGATGCCAAACAAGAGGCAGTCTCAACATCAGGAACGAAAGCCCCCGACACATCAGGAACAGCGCCTAAGCCTTCAACTGGACTGGTATCCAACACACAGACCCAGAATCCAACCAGTACTCCAGAACAAAGCAGCATTGAGAAGCCAGTAACAAGCAATGAGGTAAAAGGAGAAAAGAAAGAGCTCTCAGGATTGAACGCTAAGGATAATACGCCACGAGGGACTCCTCCCAAATGGTCGCCCTCAGCTGCCGGTCCGAGTAGCGAGAAAGCTGATATATCTTCCTCAAGCGTGCAGAATAAGCAAGATGGCGAGAAGACCCCTGTGGGCAGACCTCCATTGGAGGAGAACATTGTCCTGGGAGTTGCCTTGGAAGGCTCCAAAAGAACTCTTCCAATAGAGGAAGATCTGAATCCATCTCCCTTTCACTCTCCAGCTGATACAAAAGAAATTTCGACACAGAGGAATGGGAGTGAGTTTGGTCCAAAGAGCAAGGATATGAAAGATGGGCAGATGCCTGCAGTTCCAGGTGGTACAAAAAGTGATTGA 2094 44.99 MVHAGSTQFSHKLGIQSVHGCNKLHISGKGKTRRHLVTIIPTSHDLRYDPGRLQLLRSASQPVYPMSSRANVLVCRSVLESSGGGAGTAVLKTAALVLTRSYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRVLFLHEPDGSWKKSNAYYVTTSYVQPLLLWMGATLICRALDPVVLPSVASQAIKQRLLNFVRALSTVLAFAYCISSLIQQVQKFATESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNINPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRTGATNRPLLLIEPSYKVNGDDKAKVSGRPARSSSEEKDAKQEAVSTSGTKAPDTSGTAPKPSTGLVSNTQTQNPTSTPEQSSIEKPVTSNEVKGEKKELSGLNAKDNTPRGTPPKWSPSAAGPSSEKADISSSSVQNKQDGEKTPVGRPPLEENIVLGVALEGSKRTLPIEEDLNPSPFHSPADTKEISTQRNGSEFGPKSKDMKDGQMPAVPGGTKSD 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 995821 1001555 - CmoCh12G001530.1 Cmo12g00153 392841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00153 697 MobiDBLite consensus disorder prediction 522 566 - -
Cmo12g00153 697 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Cmo12g00153 697 Gene3D - 299 354 IPR023408 -
Cmo12g00153 697 Gene3D - 193 297 - -
Cmo12g00153 697 MobiDBLite consensus disorder prediction 497 521 - -
Cmo12g00153 697 MobiDBLite consensus disorder prediction 497 697 - -
Cmo12g00153 697 MobiDBLite consensus disorder prediction 660 675 - -
Cmo12g00153 697 MobiDBLite consensus disorder prediction 602 619 - -
Cmo12g00153 697 Pfam Mechanosensitive ion channel 240 447 IPR006685 GO:0016020|GO:0055085
Cmo12g00153 697 MobiDBLite consensus disorder prediction 567 581 - -
Cmo12g00153 697 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 689 - -
Cmo12g00153 697 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 689 IPR045042 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00153 Cmo-Chr12:995821 Cmo16g00807 Cmo-Chr16:4154484 0 dispersed
Cmo12g00153 Cmo-Chr12:995821 Cmo05g00572 Cmo-Chr5:2804121 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00153 K22047 - csv:101213477 1172.53