Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00155 ATGGCAAACCTCGATGTTCGGTTAATCACTGAGGCTAACGGAGCAACATCGTTGCCCGGATCCTCCGATTCTATGGAGCTTGAGGCCAAGGAAATTAAGCTTTGGGGCGGCCGCTTCCAGGAGAGCGTCACAGATGCCGTCGAACGCTTTACAGAGTCGATTTCTTTTGATAAGGACCTTTACAAGCATGATATCCGCGGGAGTCGTGCTCATGCATCGATGCTCGCCAAGCAGGGATTGATAAGCGTCGGTGACGAAGACAGTATTCTAACAGGTCTTGATGCGATCGAGAGGCGTATTCAAAATGGCGAGTTCGTCTGGAGAGCTGATAGGGAAGATGTTCACATGAACATTGAAGCTGCGCTTACTGATTTGATTGGCGAACCTGCCAAGAAACTTCATACTGCTCGGAGCCGCAACGACCAAGTCGCGACAGATTTTCGCTTGTGGTGCCGCGATGCCATCGACTCCATTGTCGAGAGGATCAAAGATCTTCAGATTGCGATGGTGGATTTGGCAATTAAGAATGCAGGAACTATTGTTCCAGGTTATACACATTTGCAGAGAGCACAGCCCGTCCTACTTCAGCATCTTCTCTTGGCATTCGTTGAGCAGCTTGATCGGGATTCTGGTCGATTGCTGGACTGCAGATCTAGACTGAATTTCTGCCCCTTAGGAGCTTGTGCATTGGCTGGTACTGGCCTCCCAATTGATCGATTCATGACTTCGAACGCTTTAGGATTCTCATCTCCTTTGAGAAACAGTATCGATGCTGTTTCAGATCGGGATTTTGCAATGGAGTTTCTTTCTGCCAATTCAATTACAGCCATCCATCTTTCTCGTCTGGGAGAAGAATGGGTACTGTGGGCCTCAGAGGAGTTTGGATTCATCGCACCTAATGACTCTGTTTCAACTGGAAGTAGCATAATGCCCCAAAAGAAAAACCCGGATCCAATGGAACTCGTTCGTGGAAAGTCGGCTAGAGTCGTAGGCGATTTAGTAACCCTTTTAACATTGTGCAAGGGTCTTCCTCTTGCATACAACCGCGATCTGCAGGAAGACAAGGAGCCTGTGTTTGATAGTGTTAGGACAGTTTTAGGGATGCTTGAGGTTTCAGCTGAGTTTGCTCGGAACATCAGTTTCAATCAGGACAGAATAAAGAAGGCGTTGCCTCTTGGTCATCTTGACGCAACCACACTTGCAGACTATCTCGTGCATAAGGATAGTATATATATATATACTGTCTTTTACTCATCTTTGTTAGAAGAGCACTTGGCAAATGGAGTCCCTTTCAGAACATCTCATGATATTGTAGGCAAGTGTGTAACAATGTGTCTTGGAAAGAACTGCCAGCTGAAGGACCTGAGTCTCAATGATCTGCGAATGTTGAGTCCGATCTTTGGCGACGACGTTTACGAATTTCTTGGAGTAGAAAATGCAGTTAGCAAATTTTCGTCTTATGGCTCCACGGGATCGGAATGTGTTGCCGGTCAACTCCAATATTGGATCCAGAAACTTGGCACTGGTCAGTAG 1533 46.71 MANLDVRLITEANGATSLPGSSDSMELEAKEIKLWGGRFQESVTDAVERFTESISFDKDLYKHDIRGSRAHASMLAKQGLISVGDEDSILTGLDAIERRIQNGEFVWRADREDVHMNIEAALTDLIGEPAKKLHTARSRNDQVATDFRLWCRDAIDSIVERIKDLQIAMVDLAIKNAGTIVPGYTHLQRAQPVLLQHLLLAFVEQLDRDSGRLLDCRSRLNFCPLGACALAGTGLPIDRFMTSNALGFSSPLRNSIDAVSDRDFAMEFLSANSITAIHLSRLGEEWVLWASEEFGFIAPNDSVSTGSSIMPQKKNPDPMELVRGKSARVVGDLVTLLTLCKGLPLAYNRDLQEDKEPVFDSVRTVLGMLEVSAEFARNISFNQDRIKKALPLGHLDATTLADYLVHKDSIYIYTVFYSSLLEEHLANGVPFRTSHDIVGKCVTMCLGKNCQLKDLSLNDLRMLSPIFGDDVYEFLGVENAVSKFSSYGSTGSECVAGQLQYWIQKLGTGQ 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1008884 1012965 - CmoCh12G001550.1 Cmo12g00155 392843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00155 510 Gene3D - 53 260 IPR024083 -
Cmo12g00155 510 Gene3D - 391 408 - -
Cmo12g00155 510 Hamap Argininosuccinate lyase [argH]. 33 504 IPR009049 GO:0004056|GO:0042450
Cmo12g00155 510 Pfam Argininosuccinate lyase C-terminal 426 481 IPR029419 -
Cmo12g00155 510 Gene3D Fumarase/aspartase (Central domain) 150 390 - -
Cmo12g00155 510 ProSitePatterns Fumarate lyases signature. 306 315 IPR020557 GO:0003824
Cmo12g00155 510 PANTHER ARGININOSUCCINATE LYASE 44 507 IPR009049 GO:0004056|GO:0042450
Cmo12g00155 510 TIGRFAM argH: argininosuccinate lyase 34 407 IPR009049 GO:0004056|GO:0042450
Cmo12g00155 510 CDD Argininosuccinate_lyase 53 506 IPR009049 GO:0004056|GO:0042450
Cmo12g00155 510 PANTHER ARGININOSUCCINATE LYASE 44 507 - -
Cmo12g00155 510 PRINTS Argininosuccinate lyase family signature 341 360 - -
Cmo12g00155 510 PRINTS Argininosuccinate lyase family signature 173 193 - -
Cmo12g00155 510 PRINTS Argininosuccinate lyase family signature 262 286 - -
Cmo12g00155 510 PRINTS Argininosuccinate lyase family signature 306 322 - -
Cmo12g00155 510 PRINTS Argininosuccinate lyase family signature 224 240 - -
Cmo12g00155 510 PRINTS Argininosuccinate lyase family signature 132 154 - -
Cmo12g00155 510 Pfam Lyase 37 331 IPR022761 -
Cmo12g00155 510 SUPERFAMILY L-aspartase-like 34 505 IPR008948 GO:0003824
Cmo12g00155 510 PRINTS Fumarate lyase superfamily signature 306 322 IPR000362 -
Cmo12g00155 510 PRINTS Fumarate lyase superfamily signature 262 289 IPR000362 -
Cmo12g00155 510 PRINTS Fumarate lyase superfamily signature 178 196 IPR000362 -
Cmo12g00155 510 PRINTS Fumarate lyase superfamily signature 133 151 IPR000362 -
Cmo12g00155 510 Gene3D - 421 483 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00155 K01755 argH, ASL; argininosuccinate lyase [EC:4.3.2.1] - csv:101213711 857.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00155 Cmo-Chr12:1008884 Cmo14g00945 Cmo-Chr14:5018116 2.79E-06 dispersed
Cmo12g00155 Cmo-Chr12:1008884 Cmo05g00568 Cmo-Chr5:2794478 0 wgd
Cmo12g00155 Cmo-Chr12:1008884 Cmo09g00579 Cmo-Chr9:2830537 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g518 . Blo12g00732 . Bda03g00456 . . Bma04g00431 Bma01g02585 . Cmo12g00155 . . . Car12g00183 Sed01g4279 . Cpe07g00171 Bhi04g01383 Tan02g2479 Cmetu03g0752 . Hepe10g0432 . Lcy13g1481 . . . . . . . . . . . Lsi04g02280 Csa03g04493 Chy04g00207 . . . Bda11g00800 . . . . . Sed05g1560 . . Cma12g00201 . . . . . Bhi09g02498 Tan01g3852 Cmetu04g3041 . Hepe01g2170 Mch11g0709 . Cla11g01425 Cam11g1480 Cec11g1510 Cco11g1506 Clacu11g1641 Cmu11g1459 Cre11g1877 . . . Cme04g00237
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002720 2 2 1 3 1 1 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00155 Cmo_Chr12 FPKM 0.0 0.0 3.144166 2.849672 10.064596 13.049854 10.28567 0.0 0.0 0.0