Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00161 ATGTACGGACGTCCTCAACCCTTGACCGTAGGCGACCAGATCGCCTCCGTCCCTGACTGTGGCGACGGCGGCGAGCCCTTGGATAATCGCCTTGTTCGATATGGAGCTCACGCTCTTGAAGACGGCGCTGGAGTAGGCGGTATGATTGAGGATCTTAACCCTGATGCCGTTTATGCTTCCGCCGGTGATGGTTCAGACATGGCTATTCAACGCAGCGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAAGTGTATCTTTTCGATGCGGTTTCTCCTGAGAAGGTTCAAGCAGTGTTATTATTGTTGGGTGGTAGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTAACTCAGAGTCAGAGGAATGCTGTGGACTTCCCCGGACGTAGTAGTCAACCGCAGAGGGCAGCATCGTTAAATCGGTTTAGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTCCGATATGGTGTCCGTCAGGAGGTTGCTTTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCATACAGCCATGGTAGTGTTTCAGAGCAAGTTCAAGAAGAAAGTCCACTAGAAACTTTATGCACAAATTGTGGCACAAGTTCAATGGCTACCCCAATGATGCGGCGTGGACCATCTGGTCCTAGATCACTTTGCAATGCCTGTGGACTTTTTTGGGCAAACAGGTTTGAAAGTGATGCTGCTGCTGCTGCTGCTCCTGTCAAAGACTTGGACTGCAGACAGGAAAAAAAGGCCATGATGATGCCTGTTTCTGGCTTTTCTTCATTCATTCCGGCCCTCGTTTTGGGCTTCATTTCTGGTGCAGTTAGGGCTTTCGACAAATTCATGGCGGCTGCTAATCCTCAGCCTTTGCAAGCGCGTCCTTTCCAGGAACATGTCCAAGTTTCTACAGTGATGGGGGACGACGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGTGACGTTATGGATGATGTCGAAGAGGCTCATATGACTTCAGTGAGCGTCGCGAACCTTGGGGGGTTGGTTATGGCGTCTAGAACTAGTGAACTTACGCTTTCTTTCGAGGGCGAGGTTTATGTGTTCCCTGCAGTTACTCCCGAAAAGGTACAAGCCGTGCTCTTACTTCTTGGAGGGCGTGACGTACCAACCAGTGTACCCACAATGGAAGTACCATATGATCATATGAACAGGGGTATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCGCTGGTTAGATTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACCGTTCGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGCCCTGCTGGACCAAGAACTTTATGCAATGCATGTGGTTTGATGTGGGCCAACAAGGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGCATCCCGGATGAACATGGAACTCCCGAGGATCCTGGTAAAACTATGACTGAGGGCTCGAGTAATCCTTCCGTCGACCTAGATGAGGAGGAAGACATAAATGAAACCACTGGTGGCCAAACAAATTCGTTGCCCATGCAAATTGTCAATGATTCAACAAACGATGATGAGCAGGAACCTCTTATTGAACTTCCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1902 48.84 MYGRPQPLTVGDQIASVPDCGDGGEPLDNRLVRYGAHALEDGAGVGGMIEDLNPDAVYASAGDGSDMAIQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGSELSSGQQSVDLVTQSQRNAVDFPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVAFRMQRNKGQFTSSKKPDGSYSHGSVSEQVQEESPLETLCTNCGTSSMATPMMRRGPSGPRSLCNACGLFWANRFESDAAAAAAPVKDLDCRQEKKAMMMPVSGFSSFIPALVLGFISGAVRAFDKFMAAANPQPLQARPFQEHVQVSTVMGDDDGEYEDGGGGGGGGGGGGGGGDVMDDVEEAHMTSVSVANLGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTSVPTMEVPYDHMNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKPTIMEGEFSGIPDEHGTPEDPGKTMTEGSSNPSVDLDEEEDINETTGGQTNSLPMQIVNDSTNDDEQEPLIELPNPSDTDIDIPTNFD 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1036433 1049295 + CmoCh12G001610.1 Cmo12g00161 392849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00161 633 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 539 633 - -
Cmo12g00161 633 PANTHER GATA TRANSCRIPTION FACTOR 28 66 240 IPR045280 GO:0006355
Cmo12g00161 633 Pfam GATA zinc finger 206 240 IPR000679 GO:0006355|GO:0043565
Cmo12g00161 633 Pfam GATA zinc finger 504 540 IPR000679 GO:0006355|GO:0043565
Cmo12g00161 633 ProSitePatterns GATA-type zinc finger domain. 504 531 IPR000679 GO:0006355|GO:0043565
Cmo12g00161 633 SMART tify_2 365 400 IPR010399 -
Cmo12g00161 633 SMART tify_2 71 106 IPR010399 -
Cmo12g00161 633 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Cmo12g00161 633 SMART GATA_3 498 551 IPR000679 GO:0006355|GO:0043565
Cmo12g00161 633 SMART GATA_3 200 253 IPR000679 GO:0006355|GO:0043565
Cmo12g00161 633 Gene3D - 203 246 IPR013088 GO:0006355|GO:0008270
Cmo12g00161 633 Gene3D - 500 546 IPR013088 GO:0006355|GO:0008270
Cmo12g00161 633 MobiDBLite consensus disorder prediction 590 609 - -
Cmo12g00161 633 Pfam tify domain 73 105 IPR010399 -
Cmo12g00161 633 Pfam tify domain 368 399 IPR010399 -
Cmo12g00161 633 CDD ZnF_GATA 206 240 IPR000679 GO:0006355|GO:0043565
Cmo12g00161 633 ProSiteProfiles CCT domain profile. 433 475 IPR010402 GO:0005515
Cmo12g00161 633 Pfam CCT motif 138 180 IPR010402 GO:0005515
Cmo12g00161 633 Pfam CCT motif 433 474 IPR010402 GO:0005515
Cmo12g00161 633 PANTHER GATA TRANSCRIPTION FACTOR 28 294 540 IPR045280 GO:0006355
Cmo12g00161 633 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Cmo12g00161 633 ProSiteProfiles Tify domain profile. 365 400 IPR010399 -
Cmo12g00161 633 ProSiteProfiles GATA-type zinc finger domain profile. 206 236 IPR000679 GO:0006355|GO:0043565
Cmo12g00161 633 MobiDBLite consensus disorder prediction 318 342 - -
Cmo12g00161 633 CDD ZnF_GATA 503 538 IPR000679 GO:0006355|GO:0043565
Cmo12g00161 633 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 66 240 - -
Cmo12g00161 633 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 294 540 - -
Cmo12g00161 633 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Cmo12g00161 633 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 241 - -
Cmo12g00161 633 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 499 542 - -
Cmo12g00161 633 PANTHER GATA TRANSCRIPTION FACTOR 28 539 633 IPR045280 GO:0006355
Cmo12g00161 633 MobiDBLite consensus disorder prediction 173 194 - -
Cmo12g00161 633 MobiDBLite consensus disorder prediction 552 633 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00563 Cmo12g00161 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00563 Cmo-Chr5:2759604 Cmo12g00161 Cmo-Chr12:1036433 5.49E-55 dispersed
Cmo12g00161 Cmo-Chr12:1036433 Cmo19g00501 Cmo-Chr19:5952207 1.78E-50 dispersed
Cmo12g00161 Cmo-Chr12:1036433 Cmo05g00561 Cmo-Chr5:2750666 4.79E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10698 PF06203 CCT 2.90E-13 CL0281 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00161 - - cmax:111495925 582.793