Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00164 ATGCCTCGTCGGAGCTCTGGAGTTAAACATTACTTGTTATTACAGGACGATCTGCTTCCCGTCCTGCCCCGCGCGCTCCAGTTCGCAATCCTCCGCCGCCAGCTCATTCGGCTCCTTCACCCGCACCTGTACAAGGTGGTGGAGGTGGGTCTATGCTGGGAGGACTTGGTGCCACCATTGCTCAAGGTGAGTTTAGAAGCACTTGCACTTTTCCTTGGAAGAAATCATTTTAATGCTATCATTACCATTGCTCAAGGTGAGTCTATAATGCTATCAGGTTTGGCCTTCGGTACTGGAAGTGCGGTCGCTCACAGGGCTGTCGATGCCGTAATGGGTCCTCGAGTCATCCAACATGAGAACGTTGATTCATCATCTTCTCCAACACCTATAGCAAACAATCCGGGAGGTTCTGGAACTTGTACCGTTCAATCAAAGGCCTTTGAAGATTGTCTGAACCACTATGGAAACGACATTGGGAAGTGCCAATTCTACTTGGATATGTTGAAGGAATGTCGCAGGGGCTCAGGTTCTGTTTTGGGTGCTTAA 546 49.45 MPRRSSGVKHYLLLQDDLLPVLPRALQFAILRRQLIRLLHPHLYKVVEVGLCWEDLVPPLLKVSLEALALFLGRNHFNAIITIAQGESIMLSGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1078005 1080265 - CmoCh12G001640.1 Cmo12g00164 392852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00164 181 PANTHER COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77 88 176 - -
Cmo12g00164 181 Pfam CHCH domain 140 173 IPR010625 -
Cmo12g00164 181 PANTHER CHCH DOMAIN CONTAINING PROTEIN, EXPRESSED 88 176 - -
Cmo12g00164 181 SUPERFAMILY Cysteine alpha-hairpin motif 139 173 IPR009069 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00164 - - K22759 csv:101215322 149.828
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00164 Cmo-Chr12:1078005 Cmo05g00559 Cmo-Chr5:2709016 3.50E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g536 . . . . . . . . . Cmo12g00164 . . . Car12g00191 Sed04g0192 . Cpe07g00179 Bhi04g01401 Tan02g2454 Cmetu03g0187 . Hepe10g0442 . Lcy13g1492 . . . . . . . . . . . . . . . . . . . . Bpe05g00436 . . . . . Cma12g00210 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011813 2 1 2 1 2 0 2 0 0 1 0 0 0 1 1 1 0 3 2 0 1 1 1 0 1 0 1 2 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00164 Cmo_Chr12 FPKM 86.747383 98.405113 22.720053 26.011293 22.085367 19.650076 22.11969 67.713524 66.244751 66.828629