Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00167 ATGCCGCCACTGGGTGTGCAACTCTCCATTGCAGAACATCAGGTGACAATGGACAATGGCATAGTCCAAGTCACGTTGTCAAACCCAGATGGCATAGTGACCGGAATTCGATACAATGGAGTTGACAACTTGCTCGAAGTTCTCAATGACGAATCTAACAGAGGGTACTGGGACCTCGTGTGGAACCCATCAGCCTCTGCAACTGGATCGTTTGATGTGATAAAGGCTACAGATTTTGAGGTTATAGTGGAAAATGAAGACCAAGTGGAGCTCTCCTTTACGAGAAAATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCGTTATTGATTGATAAAAGGTTTATAATGCTTCGGGGTTCATCTGGATTCTATTCGTATGCTATTTACCAACACTTGAAAGAATGGCCTGGTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAAGTTCCATTATATGGCCATGGCAGACAACAGACAGAGATCCATGCCACTTCCAGATGACCGGTCACCACCGAGAGGCCGAGCTCTGGCCTATCCAGAGGCTGTCCTGCTCGTCGACCCCATCGAATCCGAGCTTAAGGGAGAGGTGGATGACAAGTATCAATATTCATGCGATAACAAAGATAGCGGCGTCCATGGATGGATATCCACCGACCCGCCAATCGGGTTCTGGCTAATCACCCCCAGCAATGAGTGCCGTTCCGGTGGACCCGTTAAACAGAACCTGACTTCGCACGTCGGCCCGACCACTCTTGCTGTTTTTATTAGCGCCCATTACACGGGAGAGGATCTGGTGCCGAAAATCGGAGCCGGCGAGGCATGGAAGAAAGTCTTCGGTCCTGTGTTTATCTATCTCAACTCCACTTACGATTCTAGCGACGCCCTTCAGCTCTGGGAAGATGGCAAATCACAGGCATCGATTGAAGTCCAAAGTTGGCCATACAGCTTCCCTGCTTCGGAGGATTTTCCAAAGTCAAACCAACGGGGTAATATCAGTGGCAGACTATTAGTCAAAGATAGCTACGTTAGTGAAGACTACATTCCAGCAAACGGTGCGTTTGTTGGCTTAGCTCCACCAGGAGACGTAGGTTCATGGCAAAGAGAGAGCAAGGGTTACCAATTTTGGAGCAGAGCAGATGAAGATGGATACTTTTTCATCGACCACATAAGGCCTGGCGACTACAATTTATATGCATGGGTCCCCGGTTTCATTGGAGATTATCGTTACGATTCTATCATCGACATATTAGAAGGTAGTCAGATAGACGTGGATGAGATAATATACGAGCCTCCAAGAGCAGGGGCGACACTGTGGGAAATTGGAGTCCCGGATCGCTCAGCAGAAGAGTTCTATGTTCCAGATCCAAATCCCAACTACGTCAATAAGCTCTATCTTAACCATTCCGATAAGTTTCGCCAGTATGGTCTGTGGGAAAGGTACAGCGAATTGTATCCCGATGCAGACTTGGTGTATACCGTCGGCGTCAGTGATTATACCAAGGACTGGTTCTTCGCTCAGGTTACCAGGAAGACAGAAAACGGAACATTCAAGGGAACAACATGGCAGGTGAAGTTCGAGCTGGACAACGTGGACAGCCAAGCAACTTACAAGCTTCGGGTCGCACTGGCCTCCGCTTCTATCGCGGAATTGCAGGTTGGAGTAAATGACCCGAAAGCAAAGCCGGTGTTCTCAAGTGGGCTAATCGGAAGGGACAATTCGATCGCTAGACACGGCATTCACGGCCTGTACTGGCTCTACAACGTGAATATTCCGGGAAACCGGCTGGTCTCCGGCGACAACACCATCTTCTTCACGCAGCCGAGAAGCACCAGCCCTTTCCAAGCCATTATGTACGACTATATTCGTCTGGAAGCTCCTCCGCCTCCGTCCTCCGCCCATGGTTTGTTATAA 1926 49.07 MPPLGVQLSIAEHQVTMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASATGSFDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKLVPLLIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVDPIESELKGEVDDKYQYSCDNKDSGVHGWISTDPPIGFWLITPSNECRSGGPVKQNLTSHVGPTTLAVFISAHYTGEDLVPKIGAGEAWKKVFGPVFIYLNSTYDSSDALQLWEDGKSQASIEVQSWPYSFPASEDFPKSNQRGNISGRLLVKDSYVSEDYIPANGAFVGLAPPGDVGSWQRESKGYQFWSRADEDGYFFIDHIRPGDYNLYAWVPGFIGDYRYDSIIDILEGSQIDVDEIIYEPPRAGATLWEIGVPDRSAEEFYVPDPNPNYVNKLYLNHSDKFRQYGLWERYSELYPDADLVYTVGVSDYTKDWFFAQVTRKTENGTFKGTTWQVKFELDNVDSQATYKLRVALASASIAELQVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLYWLYNVNIPGNRLVSGDNTIFFTQPRSTSPFQAIMYDYIRLEAPPPPSSAHGLL 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1101111 1106511 - CmoCh12G001670.1 Cmo12g00167 392855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00167 641 SUPERFAMILY Galactose-binding domain-like 439 629 IPR008979 -
Cmo12g00167 641 Gene3D - 329 427 - -
Cmo12g00167 641 Gene3D - 438 629 - -
Cmo12g00167 641 CDD RGL4_C 443 629 - -
Cmo12g00167 641 Pfam Polysaccharide lyase family 4, domain III 441 628 IPR029411 -
Cmo12g00167 641 SUPERFAMILY Starch-binding domain-like 330 431 IPR013784 GO:0030246
Cmo12g00167 641 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 632 - -
Cmo12g00167 641 Pfam Polysaccharide lyase family 4, domain II 355 427 IPR029413 -
Cmo12g00167 641 Pfam Rhamnogalacturonate lyase family 7 201 IPR010325 -
Cmo12g00167 641 Gene3D - 4 301 IPR014718 GO:0030246
Cmo12g00167 641 SUPERFAMILY Galactose mutarotase-like 19 293 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cmo12g00167 641 CDD RGL4_M 332 428 IPR029413 -
Cmo12g00167 641 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 632 - -
Cmo12g00167 641 CDD RGL4_N 8 299 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo09g00585 Cmo12g00167 CCT
Cmo01g01524 Cmo12g00167 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01524 Cmo-Chr1:11750520 Cmo12g00167 Cmo-Chr12:1101111 0 dispersed
Cmo01g01525 Cmo-Chr1:11756585 Cmo12g00167 Cmo-Chr12:1101111 0 dispersed
Cmo03g00891 Cmo-Chr3:6907147 Cmo12g00167 Cmo-Chr12:1101111 0 dispersed
Cmo04g00918 Cmo-Chr4:4613514 Cmo12g00167 Cmo-Chr12:1101111 0 dispersed
Cmo03g00567 Cmo-Chr3:5560628 Cmo12g00167 Cmo-Chr12:1101111 5.96E-162 transposed
Cmo12g00167 Cmo-Chr12:1101111 Cmo07g00588 Cmo-Chr7:2657026 0 wgd
Cmo12g00167 Cmo-Chr12:1101111 Cmo09g00585 Cmo-Chr9:2873512 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00167 K18195 - csv:101215720 1188.33