Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00169 ATGGCGCCTAGTTTTGACCTTGCTGTTACCAATCTTTTATGCGCTGAAGAAAATTGTATTTTCGATGATAACGATGATGACGAGTGTCTGGTCGCTCCTTATGTTCTTACGAGTAATGGGTTTCAGAGTTGGCGTCACGGCGGCGATGGGTTTCCGTTTACAAGCGATGAATGTTTGATTGAAATGGTGGAGAGGGAAACCCACCACTTGCCTGTTGATGGGTATCTCATGAAATTGCAAAACGGCGAGTTGGATGTCGGGGCTAGAAAAGATGCTGTCGATTGGATTGAACAGGTGAGTGCTCATTTCAATTTTGGTCCTCTCTGCACATACTTAGCCGTAAACTACATGGATCGATTCCTCTCCGCTTACACTCTACCAAAAGGCAAAGCTTGGACAATGCAGCTACTGGCAGTGGCATGTCTGTCTCTTGCAGCCAAATTGGAGGAGACTGAAGTCCCAATCTCGTTGGATTTACAGGTGGGTGGATCTAAATTTGTGTTTGAAGCAAGAACCATAGAAAGAATGGAGCTTTTAGTGTTGACAACATTGGGGTGGAGAATGCAAGCCGTTACGCCGTTCTCGTTTATCGATCATTACCTCGGCAAGATCCATCACGACGACAAGACATCGATCACCCGTTCGATTCGTTTACTATTGAACATAATTCAAGGGATCGAGTTCTTGGAATTCAAACCATCCGAGATTGCAGCAGCAGTGGCAATATCAGTAGCTGGAGAAGGTGAAGAGACAGCAATTCCTCTTCTAATTCAGCAGAAACTCCACATGGAAAGAGTAGTGAAGTGCATTAAGATAGTGAAGGAGATGTCGGGGAAGACGGAGGAGGAGGAGGAGTCGAGGTCGATGTCGGAGGGGCCGCAGAGCCCGAGCGGGGTATTGAACGTGAGGTGCTTAAGCTATAAAAGCAATGAAAGTACAGCAGTTGGGTCATGTGCAAATTCTTCTTCACATCATAACAGTTCAAATGGTTCAAAGAGGAGGAGATTGAACAGAGCCTGTGAAGTGGAGCTTTAG 1035 45.99 MAPSFDLAVTNLLCAEENCIFDDNDDDECLVAPYVLTSNGFQSWRHGGDGFPFTSDECLIEMVERETHHLPVDGYLMKLQNGELDVGARKDAVDWIEQVSAHFNFGPLCTYLAVNYMDRFLSAYTLPKGKAWTMQLLAVACLSLAAKLEETEVPISLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLGKIHHDDKTSITRSIRLLLNIIQGIEFLEFKPSEIAAAVAISVAGEGEETAIPLLIQQKLHMERVVKCIKIVKEMSGKTEEEEESRSMSEGPQSPSGVLNVRCLSYKSNESTAVGSCANSSSHHNSSNGSKRRRLNRACEVEL 344
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 1117393 1119446 + CmoCh12G001690.1 Cmo12g00169 392857
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00169 344 Pfam Cyclin, N-terminal domain 62 188 IPR006671 -
Cmo12g00169 344 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 336 - -
Cmo12g00169 344 Pfam Cyclin, C-terminal domain 191 288 IPR004367 -
Cmo12g00169 344 SUPERFAMILY Cyclin-like 53 188 IPR036915 -
Cmo12g00169 344 Gene3D - 61 246 - -
Cmo12g00169 344 SMART cyclin_7 94 182 IPR013763 -
Cmo12g00169 344 MobiDBLite consensus disorder prediction 314 338 - -
Cmo12g00169 344 Gene3D - 72 189 - -
Cmo12g00169 344 CDD CYCLIN 89 181 IPR013763 -
Cmo12g00169 344 PANTHER CYCLINS 1 336 IPR039361 -
Cmo12g00169 344 MobiDBLite consensus disorder prediction 278 299 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00169 Cmo-Chr12:1117393 Cmo16g00330 Cmo-Chr16:1507017 5.27E-55 dispersed
Cmo12g00169 Cmo-Chr12:1117393 Cmo03g00875 Cmo-Chr3:6824498 6.61E-90 wgd
Cmo12g00169 Cmo-Chr12:1117393 Cmo05g00557 Cmo-Chr5:2692406 3.62E-134 wgd
Cmo12g00169 Cmo-Chr12:1117393 Cmo07g00571 Cmo-Chr7:2567021 1.11E-91 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00169 K18810 - csv:101216206 495.352