Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo12g00169 | ATGGCGCCTAGTTTTGACCTTGCTGTTACCAATCTTTTATGCGCTGAAGAAAATTGTATTTTCGATGATAACGATGATGACGAGTGTCTGGTCGCTCCTTATGTTCTTACGAGTAATGGGTTTCAGAGTTGGCGTCACGGCGGCGATGGGTTTCCGTTTACAAGCGATGAATGTTTGATTGAAATGGTGGAGAGGGAAACCCACCACTTGCCTGTTGATGGGTATCTCATGAAATTGCAAAACGGCGAGTTGGATGTCGGGGCTAGAAAAGATGCTGTCGATTGGATTGAACAGGTGAGTGCTCATTTCAATTTTGGTCCTCTCTGCACATACTTAGCCGTAAACTACATGGATCGATTCCTCTCCGCTTACACTCTACCAAAAGGCAAAGCTTGGACAATGCAGCTACTGGCAGTGGCATGTCTGTCTCTTGCAGCCAAATTGGAGGAGACTGAAGTCCCAATCTCGTTGGATTTACAGGTGGGTGGATCTAAATTTGTGTTTGAAGCAAGAACCATAGAAAGAATGGAGCTTTTAGTGTTGACAACATTGGGGTGGAGAATGCAAGCCGTTACGCCGTTCTCGTTTATCGATCATTACCTCGGCAAGATCCATCACGACGACAAGACATCGATCACCCGTTCGATTCGTTTACTATTGAACATAATTCAAGGGATCGAGTTCTTGGAATTCAAACCATCCGAGATTGCAGCAGCAGTGGCAATATCAGTAGCTGGAGAAGGTGAAGAGACAGCAATTCCTCTTCTAATTCAGCAGAAACTCCACATGGAAAGAGTAGTGAAGTGCATTAAGATAGTGAAGGAGATGTCGGGGAAGACGGAGGAGGAGGAGGAGTCGAGGTCGATGTCGGAGGGGCCGCAGAGCCCGAGCGGGGTATTGAACGTGAGGTGCTTAAGCTATAAAAGCAATGAAAGTACAGCAGTTGGGTCATGTGCAAATTCTTCTTCACATCATAACAGTTCAAATGGTTCAAAGAGGAGGAGATTGAACAGAGCCTGTGAAGTGGAGCTTTAG | 1035 | 45.99 | MAPSFDLAVTNLLCAEENCIFDDNDDDECLVAPYVLTSNGFQSWRHGGDGFPFTSDECLIEMVERETHHLPVDGYLMKLQNGELDVGARKDAVDWIEQVSAHFNFGPLCTYLAVNYMDRFLSAYTLPKGKAWTMQLLAVACLSLAAKLEETEVPISLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLGKIHHDDKTSITRSIRLLLNIIQGIEFLEFKPSEIAAAVAISVAGEGEETAIPLLIQQKLHMERVVKCIKIVKEMSGKTEEEEESRSMSEGPQSPSGVLNVRCLSYKSNESTAVGSCANSSSHHNSSNGSKRRRLNRACEVEL | 344 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 1117393 | 1119446 | + | CmoCh12G001690.1 | Cmo12g00169 | 392857 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo12g00169 | 344 | Pfam | Cyclin, N-terminal domain | 62 | 188 | IPR006671 | - | |
| Cmo12g00169 | 344 | PANTHER | CARBOXY-TERMINAL DOMAIN CYCLIN | 1 | 336 | - | - | |
| Cmo12g00169 | 344 | Pfam | Cyclin, C-terminal domain | 191 | 288 | IPR004367 | - | |
| Cmo12g00169 | 344 | SUPERFAMILY | Cyclin-like | 53 | 188 | IPR036915 | - | |
| Cmo12g00169 | 344 | Gene3D | - | 61 | 246 | - | - | |
| Cmo12g00169 | 344 | SMART | cyclin_7 | 94 | 182 | IPR013763 | - | |
| Cmo12g00169 | 344 | MobiDBLite | consensus disorder prediction | 314 | 338 | - | - | |
| Cmo12g00169 | 344 | Gene3D | - | 72 | 189 | - | - | |
| Cmo12g00169 | 344 | CDD | CYCLIN | 89 | 181 | IPR013763 | - | |
| Cmo12g00169 | 344 | PANTHER | CYCLINS | 1 | 336 | IPR039361 | - | |
| Cmo12g00169 | 344 | MobiDBLite | consensus disorder prediction | 278 | 299 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo12g00169 | Cmo-Chr12:1117393 | Cmo16g00330 | Cmo-Chr16:1507017 | 5.27E-55 | dispersed | |
| Cmo12g00169 | Cmo-Chr12:1117393 | Cmo03g00875 | Cmo-Chr3:6824498 | 6.61E-90 | wgd | |
| Cmo12g00169 | Cmo-Chr12:1117393 | Cmo05g00557 | Cmo-Chr5:2692406 | 3.62E-134 | wgd | |
| Cmo12g00169 | Cmo-Chr12:1117393 | Cmo07g00571 | Cmo-Chr7:2567021 | 1.11E-91 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo12g00169 | K18810 | - | csv:101216206 | 495.352 |