Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00183 ATGGTGATGCCCGAGTCGTCTGAACGCCACCGGACAGCGTCTCGTCGAGCGAATCAACCGCAACTTGGAGCTAGGGTTCCGCTCAAGCGGTTACTTCGCGTGGCATCTGTCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTTACTCCTTATGTTCAAGAGCTTGGTATTCCTCATGCTTGGTCAAGTCTCATATGGCTCTGCGGACCGCTTTCTGGCCTCTTTGTCCAGCCTCTCGTTGGCCACATGAGCGATCGCTGCACCAGCCGATACGGCCGCCGGAGGCCATTCATTGTAGCTGGAGCGCTTTCCATTGTACTCGCCGTTCTTATTATCGGTCACTCGGCGGACCTCGGTTGGTTGATTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGTGTTTGGATTTTGGATTCTCGATGTCGCTAACAACTTAACGCAGGGTCCTTGTAGAGCTTTGCTTGCTGATCTTACCGGTAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCACTATTTATGGCGATTGGTAATATTTTTGGGTATGCCACTGGATCCTTTAGTGGCTGGTACAAGATCTTGCCGTTTACTCTTACCTCTGCATGCTCGGTTAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATGTCGTGTTCATTGCAATTACAACATATTTGAGTGTTTCAGCAGCTCAAGAGATTTCTCTAGATTCAAGCGGCAGGTCGTCCCTGGTAGTGGAAGACGGTATGGGGCAATCAAGTCATGCTTCAGAAGCATTTCTCTGGGAGTTGTTTCATACTTTTAGACACTTCTCTGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGGTAGCATGGTTTCCATTTATTCTATTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCAAATGAAGGACAGAGTTATAGTTCTGGAGTCAGAATGGGAGCATTTGGTCTGATGTTTAACTCTGTTGTCCTTGGAATAACTTCACTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTTGTATGGGGAGTCTCTAATATTTTTATGGCTCTATGTTTCCTTTCTATACTGGTTGTCACCTATGTGGCAAACAATATGGGCTATATAGGCCATGAGCTTCCACCAAATAGTATCGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGTCCCTTTGGCAATTACTTACAGCATTCCATATGCCATGATCTCCTCGCGTGTTGAATCTTTGCAACTTGGTCAAGGTTTGTCTGCGGGTGTCTTGAACTTGGCAATAGTAATTCCTCAGGTTGTGGTATCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAATTCTCCAGCTTTTGCTGTGGCAGCATTTGCAGCCTTTGCAAGTGGACTCATTGCTATCTTGGCCCTTCCTCGGTCTAGTGCTCAGAATCCCAGAGCCCTCACATGA 1512 46.63 MVMPESSERHRTASRRANQPQLGARVPLKRLLRVASVACGIQFGWALQLSLLTPYVQELGIPHAWSSLIWLCGPLSGLFVQPLVGHMSDRCTSRYGRRRPFIVAGALSIVLAVLIIGHSADLGWLIGDRGDVRPRAIGFFVFGFWILDVANNLTQGPCRALLADLTGKDHRRNRVANAYFSLFMAIGNIFGYATGSFSGWYKILPFTLTSACSVNCANLKSAFLIDVVFIAITTYLSVSAAQEISLDSSGRSSLVVEDGMGQSSHASEAFLWELFHTFRHFSGYIWVILLVTSLTWVAWFPFILFDTDWMGREIYGGKPNEGQSYSSGVRMGAFGLMFNSVVLGITSLLMEKLCRKWGAGFVWGVSNIFMALCFLSILVVTYVANNMGYIGHELPPNSIVSAALIIFALLGVPLAITYSIPYAMISSRVESLQLGQGLSAGVLNLAIVIPQVVVSLGSGPWDQLFGGGNSPAFAVAAFAAFASGLIAILALPRSSAQNPRALT 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1194417 1199124 - CmoCh12G001830.1 Cmo12g00183 392871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00183 503 TIGRFAM GPH_sucrose: sucrose/H+ symporter 26 495 IPR005989 GO:0005887|GO:0008515|GO:0015770
Cmo12g00183 503 Pfam MFS/sugar transport protein 44 191 - -
Cmo12g00183 503 Gene3D MFS general substrate transporter like domains 28 491 IPR036259 -
Cmo12g00183 503 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 7 501 - -
Cmo12g00183 503 PANTHER SUGAR TRANSPORTER 7 501 - -
Cmo12g00183 503 CDD MFS_SLC45_SUC 31 489 - -
Cmo12g00183 503 SUPERFAMILY MFS general substrate transporter 31 494 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00183 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:101220384 912.909
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00870 Cmo-Chr5:5771453 Cmo12g00183 Cmo-Chr12:1194417 8.10E-159 dispersed
Cmo12g00183 Cmo-Chr12:1194417 Cmo12g00675 Cmo-Chr12:4526412 6.51E-152 dispersed
Cmo12g00183 Cmo-Chr12:1194417 Cmo01g00506 Cmo-Chr1:2439390 1.91E-159 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo01g00506 . 11 493 Sucrose Transporter Gene Family AT1G22710 62.9 6.0e-181 631.3
Cmo05g00870 . 10 485 Sucrose Transporter Gene Family AT1G22710 61.9 1.0e-175 614.0
Cmo12g00183 . 28 492 Sucrose Transporter Gene Family AT1G22710 51.2 5.7e-139 491.9
Cmo01g00506 . 12 480 Sucrose Transporter Gene Family AT2G14670 62.8 6.0e-178 621.3
Cmo05g00870 . 7 469 Sucrose Transporter Gene Family AT2G14670 62.4 1.9e-171 599.7
Cmo12g00183 . 27 492 Sucrose Transporter Gene Family AT2G14670 51.4 9.7e-136 481.1
Cmo01g00506 . 13 410 Sucrose Transporter Gene Family AT1G66570 60.8 9.3e-149 524.2
Cmo05g00870 . 7 399 Sucrose Transporter Gene Family AT1G66570 60.3 1.3e-142 503.8
Cmo12g00675 . 152 604 Sucrose Transporter Gene Family AT2G02860 70.0 1.0e-182 637.1
Cmo05g00901 . 152 599 Sucrose Transporter Gene Family AT2G02860 67.4 8.2e-177 617.5
Cmo01g00506 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.0 9.3e-163 570.9
Cmo05g00870 . 7 469 Sucrose Transporter Gene Family AT5G06170 59.6 1.9e-160 563.1
Cmo01g00506 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.4 1.1e-174 610.5
Cmo05g00870 . 7 469 Sucrose Transporter Gene Family AT5G43610 62.2 3.0e-169 592.4
Cmo12g00183 . 27 492 Sucrose Transporter Gene Family AT5G43610 50.7 1.3e-132 470.7
Cmo12g00183 . 24 499 Sucrose Transporter Gene Family AT1G09960 73.0 4.1e-206 714.9
Cmo05g00870 . 1 479 Sucrose Transporter Gene Family AT1G09960 50.9 4.7e-133 472.2
Cmo01g00506 . 19 480 Sucrose Transporter Gene Family AT1G09960 51.7 3.1e-129 459.5
Cmo01g00506 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.7 4.6e-173 605.1
Cmo05g00870 . 7 485 Sucrose Transporter Gene Family AT1G71880 59.7 2.4e-169 592.8
Cmo12g00183 . 27 503 Sucrose Transporter Gene Family AT1G71880 51.4 2.3e-135 479.9
Cmo01g00506 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.4 2.2e-167 586.3
Cmo05g00870 . 7 485 Sucrose Transporter Gene Family AT1G71890 58.7 3.6e-165 578.9
Cmo01g00506 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.7 4.6e-173 605.1
Cmo05g00870 . 7 485 Sucrose Transporter Gene Family AT1G71880 59.7 2.4e-169 592.8
Cmo12g00183 . 27 503 Sucrose Transporter Gene Family AT1G71880 51.4 2.3e-135 479.9
Cmo01g00506 . 11 493 Sucrose Transporter Gene Family AT1G22710 62.9 6.0e-181 631.3
Cmo05g00870 . 10 485 Sucrose Transporter Gene Family AT1G22710 61.9 1.0e-175 614.0
Cmo12g00183 . 28 492 Sucrose Transporter Gene Family AT1G22710 51.2 5.7e-139 491.9
Cmo12g00675 . 152 604 Sucrose Transporter Gene Family AT2G02860 70.0 1.0e-182 637.1
Cmo05g00901 . 152 599 Sucrose Transporter Gene Family AT2G02860 67.4 8.2e-177 617.5
Cmo12g00183 . 24 499 Sucrose Transporter Gene Family AT1G09960 73.0 4.1e-206 714.9
Cmo05g00870 . 1 479 Sucrose Transporter Gene Family AT1G09960 50.9 4.7e-133 472.2
Cmo01g00506 . 19 480 Sucrose Transporter Gene Family AT1G09960 51.7 3.1e-129 459.5
Cmo01g00506 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.4 2.2e-167 586.3
Cmo05g00870 . 7 485 Sucrose Transporter Gene Family AT1G71890 58.7 3.6e-165 578.9
Cmo01g00506 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.4 1.1e-174 610.5
Cmo05g00870 . 7 469 Sucrose Transporter Gene Family AT5G43610 62.2 3.0e-169 592.4
Cmo12g00183 . 27 492 Sucrose Transporter Gene Family AT5G43610 50.7 1.3e-132 470.7
Cmo01g00506 . 13 410 Sucrose Transporter Gene Family AT1G66570 60.8 9.3e-149 524.2
Cmo05g00870 . 7 399 Sucrose Transporter Gene Family AT1G66570 60.3 1.3e-142 503.8
Cmo01g00506 . 12 480 Sucrose Transporter Gene Family AT2G14670 62.8 6.0e-178 621.3
Cmo05g00870 . 7 469 Sucrose Transporter Gene Family AT2G14670 62.4 1.9e-171 599.7
Cmo12g00183 . 27 492 Sucrose Transporter Gene Family AT2G14670 51.4 9.7e-136 481.1
Cmo01g00506 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.0 9.3e-163 570.9
Cmo05g00870 . 7 469 Sucrose Transporter Gene Family AT5G06170 59.6 1.9e-160 563.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010988 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00183 Cmo_Chr12 FPKM 58.062176 63.395885 72.782486 70.228966 26.651773 28.526461 26.609192 23.621916 22.564491 22.855593