Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00183 ATGGTGATGCCCGAGTCGTCTGAACGCCACCGGACAGCGTCTCGTCGAGCGAATCAACCGCAACTTGGAGCTAGGGTTCCGCTCAAGCGGTTACTTCGCGTGGCATCTGTCGCATGTGGAATTCAATTCGGTTGGGCTTTGCAGCTCTCTCTTCTTACTCCTTATGTTCAAGAGCTTGGTATTCCTCATGCTTGGTCAAGTCTCATATGGCTCTGCGGACCGCTTTCTGGCCTCTTTGTCCAGCCTCTCGTTGGCCACATGAGCGATCGCTGCACCAGCCGATACGGCCGCCGGAGGCCATTCATTGTAGCTGGAGCGCTTTCCATTGTACTCGCCGTTCTTATTATCGGTCACTCGGCGGACCTCGGTTGGTTGATTGGTGACAGAGGTGATGTTAGGCCTCGTGCGATTGGATTCTTTGTGTTTGGATTTTGGATTCTCGATGTCGCTAACAACTTAACGCAGGGTCCTTGTAGAGCTTTGCTTGCTGATCTTACCGGTAAGGATCATCGAAGGAATCGAGTGGCAAATGCTTATTTTTCACTATTTATGGCGATTGGTAATATTTTTGGGTATGCCACTGGATCCTTTAGTGGCTGGTACAAGATCTTGCCGTTTACTCTTACCTCTGCATGCTCGGTTAATTGTGCAAATCTCAAGTCAGCTTTCTTGATTGATGTCGTGTTCATTGCAATTACAACATATTTGAGTGTTTCAGCAGCTCAAGAGATTTCTCTAGATTCAAGCGGCAGGTCGTCCCTGGTAGTGGAAGACGGTATGGGGCAATCAAGTCATGCTTCAGAAGCATTTCTCTGGGAGTTGTTTCATACTTTTAGACACTTCTCTGGGTATATATGGGTAATTTTGCTTGTCACTTCCCTGACATGGGTAGCATGGTTTCCATTTATTCTATTTGATACTGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCAAATGAAGGACAGAGTTATAGTTCTGGAGTCAGAATGGGAGCATTTGGTCTGATGTTTAACTCTGTTGTCCTTGGAATAACTTCACTACTTATGGAGAAGCTGTGCAGAAAGTGGGGTGCTGGTTTTGTATGGGGAGTCTCTAATATTTTTATGGCTCTATGTTTCCTTTCTATACTGGTTGTCACCTATGTGGCAAACAATATGGGCTATATAGGCCATGAGCTTCCACCAAATAGTATCGTATCAGCTGCATTGATTATCTTTGCTCTTCTTGGCGTCCCTTTGGCAATTACTTACAGCATTCCATATGCCATGATCTCCTCGCGTGTTGAATCTTTGCAACTTGGTCAAGGTTTGTCTGCGGGTGTCTTGAACTTGGCAATAGTAATTCCTCAGGTTGTGGTATCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGTGGTGGAAATTCTCCAGCTTTTGCTGTGGCAGCATTTGCAGCCTTTGCAAGTGGACTCATTGCTATCTTGGCCCTTCCTCGGTCTAGTGCTCAGAATCCCAGAGCCCTCACATGA 1512 46.63 MVMPESSERHRTASRRANQPQLGARVPLKRLLRVASVACGIQFGWALQLSLLTPYVQELGIPHAWSSLIWLCGPLSGLFVQPLVGHMSDRCTSRYGRRRPFIVAGALSIVLAVLIIGHSADLGWLIGDRGDVRPRAIGFFVFGFWILDVANNLTQGPCRALLADLTGKDHRRNRVANAYFSLFMAIGNIFGYATGSFSGWYKILPFTLTSACSVNCANLKSAFLIDVVFIAITTYLSVSAAQEISLDSSGRSSLVVEDGMGQSSHASEAFLWELFHTFRHFSGYIWVILLVTSLTWVAWFPFILFDTDWMGREIYGGKPNEGQSYSSGVRMGAFGLMFNSVVLGITSLLMEKLCRKWGAGFVWGVSNIFMALCFLSILVVTYVANNMGYIGHELPPNSIVSAALIIFALLGVPLAITYSIPYAMISSRVESLQLGQGLSAGVLNLAIVIPQVVVSLGSGPWDQLFGGGNSPAFAVAAFAAFASGLIAILALPRSSAQNPRALT 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1194417 1199124 - CmoCh12G001830.1 Cmo12g00183 392871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00183 503 TIGRFAM GPH_sucrose: sucrose/H+ symporter 26 495 IPR005989 GO:0005887|GO:0008515|GO:0015770
Cmo12g00183 503 Pfam MFS/sugar transport protein 44 191 - -
Cmo12g00183 503 Gene3D MFS general substrate transporter like domains 28 491 IPR036259 -
Cmo12g00183 503 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 7 501 - -
Cmo12g00183 503 PANTHER SUGAR TRANSPORTER 7 501 - -
Cmo12g00183 503 CDD MFS_SLC45_SUC 31 489 - -
Cmo12g00183 503 SUPERFAMILY MFS general substrate transporter 31 494 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00870 Cmo-Chr5:5771453 Cmo12g00183 Cmo-Chr12:1194417 8.10E-159 dispersed
Cmo12g00183 Cmo-Chr12:1194417 Cmo12g00675 Cmo-Chr12:4526412 6.51E-152 dispersed
Cmo12g00183 Cmo-Chr12:1194417 Cmo01g00506 Cmo-Chr1:2439390 1.91E-159 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00183 K15378 - csv:101220384 912.909