Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00184 ATGGCTTTTCACTCAGCTTTCTTCCTGCTTTTGTTCCTCACTTCCTCCATCTCTGCTTCTTCTCAAGCTTTTACTGCTACTTCTACTGCTCCCAATCAGTCCCAGTTCTTCCTTCTCATGCAAAACACTGCCTCGGGAAAGCTCCTCACTGATTGGGATCTTTCCAAAGGTAAATCCTTCTGCAACTTCACCGGAATCGACTGCAATGACCGAGGTAGCGTCGTTCGGATCGATATCTCTGGCCAGCCTCTCTCTGGTGGCTTCCCCGAAGATCTATGCTCTTACCTCCCAGAGCTACGAGTTCTTCGTCTCGCCCATACTGGTTTCCAGGGACGTTTTCCTCCAGGAATCACTAATTGTTCACTCCTTGAAGAGCTTGACATGAGCTCCATGAATCTCAATGGAACAATCCCGGATTTGTCGCAAATGAAACAACTACGTCTGCTCGACTTATCGTACAATTCCTTCACTGGCGACTTTCCCATGTCGGTTTTCGACCTTGTGAATCTTGAGGTGCTGAATTTCAATGAGAATTATAATCTCAACTTATGGAAGTTGCCTGAGAAGATCTCCAGATTGAAGAAGCTGAAATCCATGGTGTTGACAACGTGTATGTTAGACGGGGAAATCCCGAGATCGATTGGGAACATGACGTCTCTTGTCGATCTCGAACTCAGTGGGAACTTTCTCAAGGGAGAGATCCCAAAAGAAATCTCCTTACTGAAGAACTTGCAACAGCTTGAACTCTATTACAATGAACTCACAGGAAACATACCAGAGGAATTCGGAAATCTAACGGAGCTCGTCGACGTCGACATGTCAGTGAACCTTTTAACAGGAGAGCTACCAGAATCCATTTGCAAACTCCCAAAGCTTAAAGTTCTACAGATTTACAACAATAGTCTAACAGGAGAGATCCCAAGTGTACTAGCTAACTCAACAACACTAACTATGCTATCACTTTATGACAACTTTCTTACAGGACAGATTCCACAAAAGTTGGGGAAGTACTCACCAATGGTCGTCGTCGACTTGTCGGAAAATCGCCTGTCGGGGCCATTGCCATTGGATATATGCAGAGGGGGGGAATTGCTATACTTTCTTGTCCTGCAAAACAGCCTTTCTGGAGAAATCCCAGCAAGTTTCGCCGAATGCGAGTCGATTTTGAGGTTTCGGGTTAGTTTCAATCAGTTGGTAGGAGAAATTCCTCAAGAACTTTTGGCTCTCCCCCATGTTTCAATCATTGATGTTGCTCATAATCATCTCACTGGTTCCATTTCAAGTTCTATCTCACAGGCAAGAAACTTATCAGAGTTGTTCTTGCAAAGAAACAGGATTTCTGGAGTTATCCCGCCGGAGATTTCAGGAGCAACCAATCTGGTGAAGCTTGATCTCAGCAATAATCTTCTCTCCGGTCCGGTGCCGTTCGAGATCGGCAATCTGAAGAAGCTTAATCTGGTGATGTTACAAGGAAATCAGCTGGATTCATCGATCCCTAGTTCATTCACTTCGTTGAAATCCCTCAGTGTTCTTGATCTCTCAAACAATCGTTTTTCCGGCGAAATCCCAGAAAGTTTGAGTAAATTGTCCCCAAATTCTTTGAATCTTTCGAACAATCAACTTTCCGGTCAAATTCCTCTGCCTTTCATCAAACAAGGATTGGCGGATAGATTTTCCGGCAATCCAAATCTATGCATTCCACCGGCGTATTTCATTTCAACGGAACAGAAATTCCGAATTTGCTCGCGTTTTCCCTTCGCAAAACGTCTGAATTTCATCTGGACAATCGGAATTCCATTGCTCATCTTCATCACCGCCGCCGTCCTGTTCATAAAACGCCGAATCACAACCAGAAAGACCTCAGACATCGAGAACAAAGAAACCCTAACTTCGCGATTCTTCGACCAAAACTCGATTCTAGAAGCCATGGCGGAAAAGAACATCGTCGGTCACGGTGGATCCGGAACCGTCTACAAAATCGAGATCGGAAAAGGAGAAATCGTCGCCGTAAAGAGGCTATGGAATCGGAGAGCGAAACATCTCGTCGACAAGGAATTGAAAACAGAAATCGAAACCCTAAAAACCGTACGGCACAAGAACATCGCCAAACTCTACAACTACTTTGCGGCTCTAAATTGCAGCCTTATGGTTTACGAATATATACCCAACGGAAACCTCTGGGACGCGCTTCATAAAGGGTGGATTCATCTCGATTGGCCCACGCGCCACCGCATCGCGGTGGAAATCGCCCAAGGCCTCGCTTATCTCCACCACAACTTCTCGCCGCCGGTAATCCACAGAGACATCAAAACCACAAACATTCTGCTCGACGCAAATTACCAACCCAGAATCGCAGATTTCGGCATAGCCAAAATCCTACAACGAGGCAAAGACTCAACCGGCTCTATAATCGCCGGAAAAACCTCCGGCTACTTAGCTCCCGATTATGCAGATTCATCAACAGCAACAACCAAATGCGACGTGTACAGTTTTGGGGTGGTTTTAATGGAGCTGATTACCGGGAAGAACCCGATTGAAGCCGAATATGGAGATAACAAGAACATTGCACACTGGATTTCGAACAAAATCGACACAAACGAACAAATTCTTGAGATTCTCGACAAAAGATTAAAAGGGTTGTTCATAAATGAGATAATTAAAGCATTGGGCATCGCAATTCGCTGTACTAAGAACAATCCAGAGCTTCGACCCGCCATGGGAGAGGTGGTTGAGCTTCTGCAAGAGGTGGATCCTTGCAAATTTGATCAAGCTTCGAAGATGTCAAAAAAGTAG 2793 45.15 MAFHSAFFLLLFLTSSISASSQAFTATSTAPNQSQFFLLMQNTASGKLLTDWDLSKGKSFCNFTGIDCNDRGSVVRIDISGQPLSGGFPEDLCSYLPELRVLRLAHTGFQGRFPPGITNCSLLEELDMSSMNLNGTIPDLSQMKQLRLLDLSYNSFTGDFPMSVFDLVNLEVLNFNENYNLNLWKLPEKISRLKKLKSMVLTTCMLDGEIPRSIGNMTSLVDLELSGNFLKGEIPKEISLLKNLQQLELYYNELTGNIPEEFGNLTELVDVDMSVNLLTGELPESICKLPKLKVLQIYNNSLTGEIPSVLANSTTLTMLSLYDNFLTGQIPQKLGKYSPMVVVDLSENRLSGPLPLDICRGGELLYFLVLQNSLSGEIPASFAECESILRFRVSFNQLVGEIPQELLALPHVSIIDVAHNHLTGSISSSISQARNLSELFLQRNRISGVIPPEISGATNLVKLDLSNNLLSGPVPFEIGNLKKLNLVMLQGNQLDSSIPSSFTSLKSLSVLDLSNNRFSGEIPESLSKLSPNSLNLSNNQLSGQIPLPFIKQGLADRFSGNPNLCIPPAYFISTEQKFRICSRFPFAKRLNFIWTIGIPLLIFITAAVLFIKRRITTRKTSDIENKETLTSRFFDQNSILEAMAEKNIVGHGGSGTVYKIEIGKGEIVAVKRLWNRRAKHLVDKELKTEIETLKTVRHKNIAKLYNYFAALNCSLMVYEYIPNGNLWDALHKGWIHLDWPTRHRIAVEIAQGLAYLHHNFSPPVIHRDIKTTNILLDANYQPRIADFGIAKILQRGKDSTGSIIAGKTSGYLAPDYADSSTATTKCDVYSFGVVLMELITGKNPIEAEYGDNKNIAHWISNKIDTNEQILEILDKRLKGLFINEIIKALGIAIRCTKNNPELRPAMGEVVELLQEVDPCKFDQASKMSKK 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1201778 1204775 + CmoCh12G001840.1 Cmo12g00184 392872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00184 930 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 9 929 - -
Cmo12g00184 930 Gene3D Transferase(Phosphotransferase) domain 1 721 929 - -
Cmo12g00184 930 ProSiteProfiles Protein kinase domain profile. 643 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00184 930 Gene3D Ribonuclease Inhibitor 37 181 IPR032675 -
Cmo12g00184 930 SUPERFAMILY Protein kinase-like (PK-like) 635 913 IPR011009 -
Cmo12g00184 930 ProSitePatterns Serine/Threonine protein kinases active-site signature. 764 776 IPR008271 GO:0004672|GO:0006468
Cmo12g00184 930 SUPERFAMILY L domain-like 258 573 - -
Cmo12g00184 930 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 929 - -
Cmo12g00184 930 SMART LRR_typ_2 289 313 IPR003591 -
Cmo12g00184 930 SMART LRR_typ_2 241 264 IPR003591 -
Cmo12g00184 930 SMART LRR_typ_2 481 504 IPR003591 -
Cmo12g00184 930 SMART LRR_typ_2 96 120 IPR003591 -
Cmo12g00184 930 SMART LRR_typ_2 505 529 IPR003591 -
Cmo12g00184 930 SMART LRR_typ_2 167 193 IPR003591 -
Cmo12g00184 930 SMART LRR_typ_2 434 457 IPR003591 -
Cmo12g00184 930 Gene3D Ribonuclease Inhibitor 182 285 IPR032675 -
Cmo12g00184 930 Gene3D Ribonuclease Inhibitor 295 574 IPR032675 -
Cmo12g00184 930 ProSitePatterns Protein kinases ATP-binding region signature. 649 671 IPR017441 GO:0005524
Cmo12g00184 930 SMART serkin_6 643 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00184 930 Pfam Leucine Rich Repeat 508 529 IPR001611 GO:0005515
Cmo12g00184 930 Gene3D Phosphorylase Kinase; domain 1 615 720 - -
Cmo12g00184 930 Pfam Leucine rich repeat 410 470 IPR001611 GO:0005515
Cmo12g00184 930 SUPERFAMILY RNI-like 74 352 - -
Cmo12g00184 930 Pfam Protein kinase domain 645 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01507 Cmo12g00184 CCT
Cmo09g00599 Cmo12g00184 CCT
Cmo05g00597 Cmo12g00184 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00600 Cmo-Chr9:2978743 Cmo12g00184 Cmo-Chr12:1201778 0 dispersed
Cmo12g00184 Cmo-Chr12:1201778 Cmo19g00527 Cmo-Chr19:6163173 0 dispersed
Cmo12g00184 Cmo-Chr12:1201778 Cmo05g00597 Cmo-Chr5:2970194 0 wgd
Cmo12g00184 Cmo-Chr12:1201778 Cmo09g00599 Cmo-Chr9:2974990 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74711 PF00069 Pkinase 8.50E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00184 - - csv:101220145 1455.27