Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00187 ATGAGGTTGAAGGAGGATTCGCCTTACGCCACCAACGAACCGCCGCCTGAAATGGACGAAACGATGTCGCTTCAATCCAAGTATTCGAATGCTCACCAGCGGAAGGTGGTTGTTGTTGGCTATGCTCTTACCTCCAAGAAGACCAAGAGCTTTATGAAGCCTAAGCTTGAAGGATTAGCTAGGAACAAGGGTATATTGTTCGTTGCAATTGATCAAAACAGACCTCTGTCGGATCAGGGGCCATTTGACATTGTTCTGCACAAGAGTGCGATTCAGAATCCTTCCTCCACCACATATGGGTTGCATGCGTCATTTCTGATTTTTTCTTTTTCACCATTTGCTGGGTCCCAGTTGTTTGTAGTTGGTTTTTTGTCAGGAAAAGAGTGGCGTCAGATTCTCGAGCTGCAAATTAATTTCGTTTGTATTCTTGCACCCTTGACCCTTTCTGGTGCTCATTTGGCCATGGAATACAGACAAACACACCCAGAAGTGACCGTTCTAGATCCCCCAGATGCGATACAACACTTGCACAATCGCCAGTCTATGCTCCAGGCAGTTGCCGACATGGAATTATCTGAATCCTATGGCAAAGTAGATGTTCCAAGGCAATTAGTCATAAAGAAAGATGCATCCTCCATTTCTGATGCAGTGGGGAAGGTCGGGCTAAAACTTCCTCTTGTTGCTAAACCGTTGGTTGCTGATGGAAGTGAAAAGTCCCATGAATTATCTTTAGCTTATGATAAGTACTCCCTCCAAAAGCTTGAACCTCCTCTTGTTCTCCAGGAGTTTGTCAACCATGGAGGTGTCATGTTTAAGGTTTTCATAGTTGGTGAAGCTATAAAAGTGGTCAGACGTTTTTCGTTGCCAAATGTCAGCATGTGGGAGGTCTTGAAAAATGCTGGTATTTATCGTTTCCCGAGAGTTTCTCATGCTGCTGCATCTGCTGATGATGCTGATCTGGATCCTTGTGTTGCTGAACTTCCTCCACGACCTCTATTAGAGAGATTAGCAAAGGAACTCAGACGTCGACTGGGGCTTCGATTATTCAACCTCGACATTATTCGAGAGTATGGAACTCGAGATCGTTATTATGTCATTGATATCAACTACTTCCCTGGGTATGGGAAAATGCCAGAATACGAGCACATATTCACAGATTTCCTCTTGGGCTTGGTACAGAGCAAGTACAAGAAGAGAACAACTTACTAG 1209 44.42 MRLKEDSPYATNEPPPEMDETMSLQSKYSNAHQRKVVVVGYALTSKKTKSFMKPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKSAIQNPSSTTYGLHASFLIFSFSPFAGSQLFVVGFLSGKEWRQILELQINFVCILAPLTLSGAHLAMEYRQTHPEVTVLDPPDAIQHLHNRQSMLQAVADMELSESYGKVDVPRQLVIKKDASSISDAVGKVGLKLPLVAKPLVADGSEKSHELSLAYDKYSLQKLEPPLVLQEFVNHGGVMFKVFIVGEAIKVVRRFSLPNVSMWEVLKNAGIYRFPRVSHAAASADDADLDPCVAELPPRPLLERLAKELRRRLGLRLFNLDIIREYGTRDRYYVIDINYFPGYGKMPEYEHIFTDFLLGLVQSKYKKRTTY 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1223779 1228302 + CmoCh12G001870.1 Cmo12g00187 392875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00187 402 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain 38 173 IPR041429 -
Cmo12g00187 402 Gene3D - 169 373 - -
Cmo12g00187 402 MobiDBLite consensus disorder prediction 1 22 - -
Cmo12g00187 402 PIRSF ITPK 124 402 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
Cmo12g00187 402 PIRSF ITPK 18 105 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
Cmo12g00187 402 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 154 395 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
Cmo12g00187 402 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 32 89 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
Cmo12g00187 402 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain 193 389 IPR040464 -
Cmo12g00187 402 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 154 395 - -
Cmo12g00187 402 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 32 89 - -
Cmo12g00187 402 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 169 376 - -
Cmo12g00187 402 Gene3D - 21 113 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00187 K00913 ITPK1; inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase [EC:2.7.1.159 2.7.1.134] - csv:101206636 571.237
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00598 Cmo12g00187 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00187 Cmo-Chr12:1223779 Cmo16g01222 Cmo-Chr16:8754420 1.92E-79 dispersed
Cmo12g00187 Cmo-Chr12:1223779 Cmo05g00598 Cmo-Chr5:2982571 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g583 . . . . . . . . Cmo05g00598 Cmo12g00187 . . . Car12g00213 Sed01g1243 . Cpe07g00196 Bhi04g00887 Tan02g2526 Cmetu03g1186 . . . . Cla08g01196 Cam08g1658 Cec08g1235 Cco08g1354 Clacu08g1355 . Cre08g1142 . . Cone17ag1147 Cone20ag0580 . . . Cme03g01769 Blo17g00078 . . Bda13g01339 . Bpe14g00508 . Bma02g00094 . . . Cma12g00232 Cma05g00573 Car05g00519 . Cpe11g00502 . . . . . . . . . . . . . . . Lsi08g01058 Csa02g02240 Chy03g01276 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003608 3 3 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 4 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00187 Cmo_Chr12 FPKM 99.275856 103.537163 98.568611 100.183273 64.861694 75.271347 66.005646 54.842949 51.53994 51.50724