Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00191 ATGCGAATGAACCTACACAGCTTTCATCTTGTCATTCATAAGCGTCCACATACACACTCTTTTCCAATGTTCTTTTGGACTTTGGATGTGCCGTGTAAGAACAAAGCTCCCCTAACTTTGACTATCAGAGTATATGTTGGCTGCATGAGTCCATGGAATCTATACTTCCATTTTTCCAGTAGCCTTTTGGTGCACTCTTCTGGCAAAAACCAATCCCCCCATCAGAAAAGCCATCAGAAGCATCCAAAAATGTCCAGAACGCTTCCATTTCTAAGAACTCTGCTCTCCGTTTACCTCTTATGCTTCGTATCCACACCCTTCTGTGTAAGCTCACTGACTGCCAAAACAGACCAGGCCATCTTGCTTGAGCTTAAAGAACAATGGGGGAATCCGCCGTCTCTCCACCTGTGGAACTCCTTGTCCTCGCCCTGCGATTGGCCTGATATCGTCTGTAGAGACAGCACGGTCACAGGAATCTCTCTCGGAGACAAGAATATCACTGGGAAAATCCCAATTGTCATCTGTGACCTGCAAAACCTCACTGAGCTTGATTTTTCCTGGAACTATATCCCGGGTGAGTTCCCTGAGGCTCTGTTCAACTGTTCCAAGCTCAAGTATCTTGATCTTTCAGGAAACTATTTTGCGGGGTCGATACCACACGACATAGATCGATTACAAACTCTGGAGTACATGGACCTTAGCGCCAACAACTTCTCAGGAGATTTTCCAGCAGCACTAGGCCGGTTGCCAGCTTTGAGAACTTTAAACATTTATCGAACTCAGTGCAATGGCACATTGCCAGCTGAAATTGGGAACTTGTCCAATCTTGAAACTCTGAGCTTGGCTTATAACACTTTGCTCGTCCCATCGCCAATACCACAAGAGTTTAGGAAACTGAAGAAGTTGAAATATATGTGGATAAGAAAATCCAACTTGATTGGTGAAATCCCAGAAGGCTTATCGGATCTTTTGAGCCTTGAGCACTTGGATTTATCCAGCAACAATTTGGTTGGCTCTATTCCTGCTACACTGTTCTCTCTGCAGAATTTAAGCAACTTATATCTCTTCCAAAATCAGTTGTCTGGTGAGATACCCAAATCAATCCAAGCATCAAATCTACTCAATGTCGACCTCTCTGCAAACAATTTGAGAGGCACAATCCCTGAAGATTTTGGGAAGTTGAAGAAGTTGCAGGTTCTCAACTTGTATGACAATCACTTGTCTGGTGAGATTCCTGGGAATCTAGGCCTAATACCGATGCTGAAAGGCTTTCGGATCTTCAACAACAGCTTAACCGGGGACCTGCCACAAGAATTGGGTCTGCATTCAAATCTTGAAGCATTGGAGGTTTCAATGAATAAACTAAGTGGTTCATTACCTGAACATCTCTGTAAAAATGGCGTCTTACAGGGAGTGGTTGCTTTCTCCAACAATCTTAGCGGCGAATTGCCAAGAGGGCTTGGCAATTGCAGGACCCTACGCACAATCCAGCTTTCTAATAATAACTTTTCTGGCGAATTACCTCCAGGTCTTTGGACTACTTTCAATCTATCAAGCATAATGTTAGATGGAAATTCATTCTCAGGCAAGTTACCAGATATCTTATCTTGGAATCTCTCGAGACTGACAGTAAATAACAACAAATTTTGGGGTCAAATTCCTCAAAATGTGTCTGCTTGGAAGAACTTGGTTGTGTTTGAGGCAAGCAACAATCAGCTCTCTGGTAGATTTCCCGAAGGGTTGACAAGGCTTCCTCATCTTACCACACTCATATTAAGTGGAAATCAACTCTCTGGCCAACTTCCTTCAACAATTGGTTTGTGGGAATCGTTGAATACTCTAAATCTCTCACGAAATGAACTTTCAGGCAATATTCCAGCGGCGTTTGGATTTCTTCCTAGCCTCCTTTACCTAGATTTATCAGGTAATAACTTCTCAGGTGAAATCCCACCAGAAATTGGCCAGTTAAGATTGGCTTCTCTCAACTTGTCTTCCAATCAGCTTTCAGGGAAAATCCCAGATGAGTATGAGAATACAGCATATGAAAGGAGTTTCTTGAACAATCCTAAACTATGTACCACCACTGATGCACTTGACCTTCCAAATTGTAACTCCAGACAAAGAGATATAAAAGATCATTCCTCTAAATATCTCTCCCTCCTTCTAGCTCTCATCATCACCTTCCTCATAATTGCTATACTATGGATCTTCATCTTATATAGAAGTTACTGCAAAAAGGAAGAAAGATGCCACCCTGACACTTGGAAGCTAACTTCATTCCAGAGATTGGAATTCACAGAAGCGAATATCTTATCAAACCTGACAGAAACTAATCTGATTGGAAGTGGTGGATCCGGAAAAGTGTACTGCATAGATATAAACCATGCTGGTTACTATGTTGCAGTCAAAAGGATTTGGAGTAACAAGAAGTTGGATCAAAAGCTTGAGAAAGAATTTCAAGCAGAAGTTCAAATACTTGGCTCGATTCGGCATTCGAACATAGTGAAGTTGCTATGCTGCGTCTGGAATGAGAATTCAAAGCTGTTAGTCTATGAATACATGCAAAATCAGAGCCTAGATAAGTGGCTTCATAAAGAGAAGAAAAGGTTAAGAGCGGCTACAATGGATTTTGTTGAACAATATGTCTTAGACTGGCCGAGGAGGTTGCAGATTGCTATTGGAGCTGCACAAGGCCTGAGTTATATGCACCATGATTGCTCTCCACCAATCATTCATCGAGATGTAAAGTCAAGTAACATTTTATTAGACCATGAGTTCCACGCAAGGATAGCGGATTTTGGGCTGGCAAAGATGCTGGTCAGGCAGGGAGAGCCTTACACTATGTCTGCAATAGCAGGATCTTTTGGCTATATAGCCCCAGAGTATGTGTATACAACAAAAGTAAATGAGAAGATTGATGTCTATAGCTTTGGGGTTGTACTGTTGGAACTCACAACAGGAAGAGAACCGAACTGTGGAGATGAACACACAAGCCTAGCAGAATGGGCATGGCAACAATATAGTGAAGGAAAACCTATTGCTGATGCTCTTGATGAAGAAATCAGAAACCCACGCAATTTGGAAGAGATGATTACTCTGTTCAAACTAGGGCTAATTTGTACAAGCACGTTACCTGAAATACGACCTTCGATGAAGGAGGTTCTGCAGATTCTACGCCAATGCCGCCCTCAACAAGATTGCAATGGGAGAAAGAACGCCGGCGAATTTGATGCCGTTCCCCTCCTTGGCACTTCTCTATGA 3261 42.53 MRMNLHSFHLVIHKRPHTHSFPMFFWTLDVPCKNKAPLTLTIRVYVGCMSPWNLYFHFSSSLLVHSSGKNQSPHQKSHQKHPKMSRTLPFLRTLLSVYLLCFVSTPFCVSSLTAKTDQAILLELKEQWGNPPSLHLWNSLSSPCDWPDIVCRDSTVTGISLGDKNITGKIPIVICDLQNLTELDFSWNYIPGEFPEALFNCSKLKYLDLSGNYFAGSIPHDIDRLQTLEYMDLSANNFSGDFPAALGRLPALRTLNIYRTQCNGTLPAEIGNLSNLETLSLAYNTLLVPSPIPQEFRKLKKLKYMWIRKSNLIGEIPEGLSDLLSLEHLDLSSNNLVGSIPATLFSLQNLSNLYLFQNQLSGEIPKSIQASNLLNVDLSANNLRGTIPEDFGKLKKLQVLNLYDNHLSGEIPGNLGLIPMLKGFRIFNNSLTGDLPQELGLHSNLEALEVSMNKLSGSLPEHLCKNGVLQGVVAFSNNLSGELPRGLGNCRTLRTIQLSNNNFSGELPPGLWTTFNLSSIMLDGNSFSGKLPDILSWNLSRLTVNNNKFWGQIPQNVSAWKNLVVFEASNNQLSGRFPEGLTRLPHLTTLILSGNQLSGQLPSTIGLWESLNTLNLSRNELSGNIPAAFGFLPSLLYLDLSGNNFSGEIPPEIGQLRLASLNLSSNQLSGKIPDEYENTAYERSFLNNPKLCTTTDALDLPNCNSRQRDIKDHSSKYLSLLLALIITFLIIAILWIFILYRSYCKKEERCHPDTWKLTSFQRLEFTEANILSNLTETNLIGSGGSGKVYCIDINHAGYYVAVKRIWSNKKLDQKLEKEFQAEVQILGSIRHSNIVKLLCCVWNENSKLLVYEYMQNQSLDKWLHKEKKRLRAATMDFVEQYVLDWPRRLQIAIGAAQGLSYMHHDCSPPIIHRDVKSSNILLDHEFHARIADFGLAKMLVRQGEPYTMSAIAGSFGYIAPEYVYTTKVNEKIDVYSFGVVLLELTTGREPNCGDEHTSLAEWAWQQYSEGKPIADALDEEIRNPRNLEEMITLFKLGLICTSTLPEIRPSMKEVLQILRQCRPQQDCNGRKNAGEFDAVPLLGTSL 1086
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1254606 1260725 - CmoCh12G001910.1 Cmo12g00191 392879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00191 1086 SMART serkin_6 774 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00191 1086 Pfam Leucine Rich Repeat 325 344 IPR001611 GO:0005515
Cmo12g00191 1086 Pfam Leucine Rich Repeat 203 223 IPR001611 GO:0005515
Cmo12g00191 1086 ProSitePatterns Serine/Threonine protein kinases active-site signature. 910 922 IPR008271 GO:0004672|GO:0006468
Cmo12g00191 1086 Pfam Leucine rich repeat N-terminal domain 115 151 IPR013210 -
Cmo12g00191 1086 SUPERFAMILY RNI-like 371 707 - -
Cmo12g00191 1086 Gene3D Ribonuclease Inhibitor 424 711 IPR032675 -
Cmo12g00191 1086 ProSitePatterns Protein kinases ATP-binding region signature. 780 803 IPR017441 GO:0005524
Cmo12g00191 1086 Pfam Leucine Rich repeat 585 599 IPR001611 GO:0005515
Cmo12g00191 1086 ProSiteProfiles Protein kinase domain profile. 774 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00191 1086 Pfam Protein kinase domain 776 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00191 1086 Gene3D Phosphorylase Kinase; domain 1 743 853 - -
Cmo12g00191 1086 Gene3D Ribonuclease Inhibitor 112 289 IPR032675 -
Cmo12g00191 1086 Pfam Leucine rich repeat 610 668 IPR001611 GO:0005515
Cmo12g00191 1086 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 99 1076 - -
Cmo12g00191 1086 SUPERFAMILY Protein kinase-like (PK-like) 764 1058 IPR011009 -
Cmo12g00191 1086 Gene3D Ribonuclease Inhibitor 290 423 IPR032675 -
Cmo12g00191 1086 Gene3D Transferase(Phosphotransferase) domain 1 854 1079 - -
Cmo12g00191 1086 SMART LRR_typ_2 273 298 IPR003591 -
Cmo12g00191 1086 SMART LRR_typ_2 394 418 IPR003591 -
Cmo12g00191 1086 SMART LRR_typ_2 632 656 IPR003591 -
Cmo12g00191 1086 SMART LRR_typ_2 177 201 IPR003591 -
Cmo12g00191 1086 SMART LRR_typ_2 584 608 IPR003591 -
Cmo12g00191 1086 SMART LRR_typ_2 323 347 IPR003591 -
Cmo12g00191 1086 SUPERFAMILY L domain-like 128 464 - -
Cmo12g00191 1086 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 99 1076 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00660 Cmo-Chr11:3178027 Cmo12g00191 Cmo-Chr12:1254606 0 dispersed
Cmo12g00191 Cmo-Chr12:1254606 Cmo13g00644 Cmo-Chr13:6856844 0 dispersed
Cmo12g00191 Cmo-Chr12:1254606 Cmo10g00700 Cmo-Chr10:3208478 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74712 PF00069 Pkinase 3.50E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00191 K00924 - csv:101219431 1724.52