Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00198 ATGGAAGCTCCCGAATATTTCCACAACAATGCTTACTGCTCCCAATTCACCTCCGACAAAGACGCCGCCGCCGCCACCACCGCCGACCACTTCATCGTCGAAGAGCTTCTCGATTTCTCCAACGACGACGACTCCGCCATTGCCGACTCCGGCGGCTTCTTCAATAACGTCACCTGCTTCTTGAATGGAAACTCCGCTGAATCCTCCGCCGCCACGGCGGTGGAGAGTTCCAATTCCTCCTCCTTTTCAGGTTCTGAACGGACTTCGTTTTTCGACGATGTTTCTGCCTCTTCTTTAGCCGATGTCCGTTTCTCCGACGACATCTTCATTCCGTACAATGAGTTGGTTGAGTTGGAATGGCTTGCAAGTTTTGAAGAGGAACCGTTTTCCAGCGAGGATATGCAAAAGCTAGAACTCATCACCGGAGTCAAAGTCAAACCCGACGAGCCACCCCAATCCCACCACCCAACCAACGCGGTCTCCGCCCTCTCTCACGGCCGAAATGCAGCAGCTGCGATCTTCAAACCCGACATTGTAGCGGTTCCGGCGAAGGCCCGGAGCAAACGCTCACGCACCATCCCATCAAATTGGAACAACTCCCGTCTCCTCCCACTTTCTCCGACCAGCTCCTCCTCCGAGCTAGACATCCCGGCCACCGAACCGCCACCGCACCCGGTTAAGAAAGTCCCTCCCAAAGTGGCGGCGACGGCGACGGCGGCGGTGAAGAAAAAAGAATCCTCCTCCTCATCGGAGACCGGAATGTCGGCTGGAGAAGGGCGGAAGTGTATGCACTGTGCCACTGACAAGACGCCGCAGTGGCGGACGGGCCCAATGGGCCCAAAGACGCTTTGTAACGCTTGTGGGGTCCGCTACAAATCCGGGCGGCTAGTGCCGGAGTATCGGCCGGCGGCGAGCCCGACATTTGTGCTGACGAAACACTCGAATTCCCACCGGAAAGTGTTGGAGCTCCGACGGCAAAAGGAACTGCAGAAAGCGCAGGAACAGCAGGCGTTGATGATGGATCATCATCACCATCATCACCATCAGGAAATGATGTTTGATTCATCCAACGGTGAGGATTATCTGATGAAGCAAAACGTGGCTCATGATTACCTGCACCTGATCTGA 1128 55.5 MEAPEYFHNNAYCSQFTSDKDAAAATTADHFIVEELLDFSNDDDSAIADSGGFFNNVTCFLNGNSAESSAATAVESSNSSSFSGSERTSFFDDVSASSLADVRFSDDIFIPYNELVELEWLASFEEEPFSSEDMQKLELITGVKVKPDEPPQSHHPTNAVSALSHGRNAAAAIFKPDIVAVPAKARSKRSRTIPSNWNNSRLLPLSPTSSSSELDIPATEPPPHPVKKVPPKVAATATAAVKKKESSSSSETGMSAGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELQKAQEQQALMMDHHHHHHHQEMMFDSSNGEDYLMKQNVAHDYLHLI 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1292596 1296626 - CmoCh12G001980.1 Cmo12g00198 392886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00198 375 CDD ZnF_GATA 261 308 IPR000679 GO:0006355|GO:0043565
Cmo12g00198 375 ProSiteProfiles GATA-type zinc finger domain profile. 256 292 IPR000679 GO:0006355|GO:0043565
Cmo12g00198 375 SMART GATA_3 256 306 IPR000679 GO:0006355|GO:0043565
Cmo12g00198 375 PIRSF Txn_fac_GATA_plant 13 352 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cmo12g00198 375 Pfam GATA zinc finger 262 295 IPR000679 GO:0006355|GO:0043565
Cmo12g00198 375 ProSitePatterns GATA-type zinc finger domain. 262 287 IPR000679 GO:0006355|GO:0043565
Cmo12g00198 375 MobiDBLite consensus disorder prediction 189 216 - -
Cmo12g00198 375 PANTHER GATA TRANSCRIPTION FACTOR 1 375 - -
Cmo12g00198 375 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 258 320 - -
Cmo12g00198 375 Gene3D - 254 336 IPR013088 GO:0006355|GO:0008270
Cmo12g00198 375 MobiDBLite consensus disorder prediction 185 258 - -
Cmo12g00198 375 PANTHER GATA TRANSCRIPTION FACTOR 1 375 - -
Cmo12g00198 375 MobiDBLite consensus disorder prediction 241 255 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00198 - - - cpep:111799217 598.971
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g00615 Cmo12g00198 CCT
Cmo09g00615 Cmo12g00198 ECH
Cmo05g00609 Cmo12g00198 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00198 Cmo-Chr12:1292596 Cmo14g01329 Cmo-Chr14:11109848 2.28E-78 dispersed
Cmo12g00198 Cmo-Chr12:1292596 Cmo05g00609 Cmo-Chr5:3045969 1.17E-119 wgd
Cmo12g00198 Cmo-Chr12:1292596 Cmo09g00615 Cmo-Chr9:3073403 1.67E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g279 Blo01g01777 . . Bda03g00433 . . Bma04g00410 . Cmo05g00609 Cmo12g00198 . . Car09g00560 Car12g00226 . Cpe07g00206 Cpe06g00489 . . . . . . . . . . . . . . . . . . Lsi04g02328 Csa03g04547 Chy04g00155 Cme03g01757 . . . . . . . . Sed02g0905 . Cmo09g00615 Cma09g00633 Cma12g00243 . . Cpe11g00511 . Bhi09g02574 Tan01g3930 Cmetu04g2325 . Hepe01g2218 Mch11g0766 . . . . . . . . Lsi08g01074 Csa02g02256 Chy03g01261 Cme04g00180
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10700 PF00320 GATA 2.00E-15 CL0167 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00198 Cmo_Chr12 FPKM 11.940984 13.330823 11.147387 11.990715 10.35182 12.104329 10.731328 12.220598 10.654542 13.1929