Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00200 ATGCCTGAGCTCCGTAGAAAGCCACGGAGGAGCCGGGTATCTGAAGACCCAATCCCGATTGTGCACCAAACACCCGTTAAGCTAACTGTCAGAACACGCCACCGTGGGAAACCTGCTAAGCGCGGCGGAGAGAAGTGTATTAAGGAGGGGAACGACGCGATCGACGCCGATGGTGAGAGGGATATTGTGAACCCTGGAATCGGTCTTGAAACTAGCAAAGGTGAAGTTGGGAAGAACAAAGAGCTACTGGAGGTTGGTGTTAAAGCCATGGATGAGTTCGATAGTGGAGGACGGAACGGCGATAAGGGTCCTAAAGCTGAGGATGAAAGCACGGCCGCTCCTCTTCCGGAGAAGGTTCAGGTTGGCGGCTCTCCATTATATAAAGTAGAAAGAAAACTAGGAAAAGGAGGTTTTGGTCAGGTGTATGTGGGTCGACGCATGGGTCCCACGAGCTTGAATGAAAGATCTGGCTCTGGAGCTGTAGAGATAGCCTTAAAATTTGAGCATAGAAGTAGTAAAGGGTGCAACTATGGACCTCCCTATGAGTGGCAGGTTTACAATGCACTAGGTGGTAGCCATGGTGTGCCAAGAGTTCATTACAAGGGTCGGCAAGGTGACTACTATGTCATGGTTATGGACATGCTTGGACCTAGTCTTTGGGATGTCTGGAATAACAATGCTCACACGATGTCGATTGAAATGGTTGCATGCATCGCAATCGAGGCAATCTCCATATTAGAGAAGATGCATTCTAGAGGGTACGTGCATGGTGACGTGAAGCCTGAAAACTTTTTGCTAGGCCCTCCTGGAACCCCAGAAGAGAAGAAGTTGTTTCTTGTAGATCTTGGTTTAGCAACGAAGTGGCGTGATAGTTCAACTGGTCAACATGTTGAGTATGATCAACGGCCAGACGTTTTCCGGGGAACAGTTCGGTATGCTAGTGTTCATGCGCATCTTGGCAGAACTGCTAGTCGGAGAGATGATTTGGAATCACTTGCTTACACTCTTGTTTTTCTTCTTCGTGGTCGGCTGCCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTCCTTGTGTCCAAGAAGAAGATGTCTACTTCCTCTGAAACATTGTGCTGTTTTTGCCCACAGCCTTTTAGGCAGTTTGTTGAATATGTTGTGAATTTGAAATTTGACGAAGAGCCGAACTATGCAAGATATATCTCCCTCTTTGATGGGATCGTCGGTCCAAATCCAGATATCCATCCAATTAACACGGATGGTGCACAGAAAGTTGGGCAGAAGAGAGGAAGGCTATCCATGGAGGATGAAGATGATGAACAACCAAAGAAGAAGGTTCGAATGGGGATGCCTGCAACTCAATGGATTAGTGTTTATAATGCCCGTAAACCAATGAAGCAAAGATATCACTATAACGTTGCTGATATGAGGCTCTCTCAGCACATTGAGAAAGGAAATGAAGATGGTTTATTTATTAGTTGCGTTGCTTCATGTTCGAATCTTTGGGCCCTTATTATGGACGCTGGAACTGGATTTACTGCTCAAGTTTACGAACTCTCGCCATGCTTTCTTCACAAGGACTGGATCATGGAACAGTGGGAGAAAAACTATTACATCAGTGCGATAGCAGGAGCTAATAATGGGAGCTCATTGGTAGTAATGTCCAAAGGGACTCAGTACCTTCAGCAATCTTATAAAGTCAGCGATTCATTTCCCTTCAAGTGGATAAATAAGAAATGGAGGGAGGGATTTTATGTTACTGCCATGGCCACTGCCGGCAGTAGATGGGCAATTGTCATGTCACGCGGTGCAGGATTTTCTGACCAGGTGGTGGAACTAGATTTCCTATATCCTAGTGAAGGTGTTCACCGCAGGTGGGATAGTGGTTACCGCATCACATCGACTGCTGCAACTTTGGACCAGGCTGCTCTTGTTTTGAGTGTGCCTAGGAGAAAGCCTACCGATGAAACGCAAGAAACGCTTCGGACATCTGCCTTTCCTAGTACACACGTCAAGTTAGCTGATGATTTATGGCTCGTGCCTATTCGTTATTTTTGTGGATATCTACTAGGGTTACTAATATTGTTTGTCAACATTGGGATGGCTGTCAATTACACCCGGTTCCCTTTTTCGGAACCAGAAGAACGGCTGCCATCGGGTTTCCGAGTGCCATCAGTAGCGACGAGTTCCAGAGTGAAAGAATTGGATAATCTTTGTTACTCATTCTGTTTCCGTTATCGACTGCAGCCGAGGGCGCTGCCCACCGTCATTACTAACCAAGCAAGCCAAGCCTATGAATTCTCCGCACACTTTCCCTCTCTCCGCCACCAAACTTACCCCTCTCGTTTCCCTCAAAGCTACACAAAGAATCGTGTGGTTTACCTTCCCTTATATATGTATGTGGTACGTGGAATTGCCTTTCAAATTCTCATGGAGTCTGTTGCTTCGACTTCATCCGCACCGGACCGCCCCCGTCCTCGTCTTCCTTGGTTCGAGCCCTCCCAAGCTATGACTGCCCGGATTGTTCGAGCTCTCCACCATCACCTCCGTCTCCTACACCGCTCTGATTCTTCATTCTTTGTCTTGGGAGCCACAGGCAATGTCTACATTGTGTCTCTATCCTCTACCCCCTCATGCACTTGCCCCGATCGTATTACGCCTTGCAAACACATGTTATTTGTTTACATTCGAGCTCTGGGTGTGTCACTAGATGATGCATGTCTTTGGCGGAGAACGCTTCGACCGTGTCAATTGAATCGTTTGCTTACTGCACCTGTTATGGCGGAATCGCTTGCTGAAATTAGTCTACGTAGAGTAAAAGAAAGGACTTGTGTACCTATTGTAGATATTGAAGATGGGGCTGCATGTCCTGTTTGTTTGGATGATCTAAAGGACGATCGAGTTGTGGCTTGTACGACATGTCGAAATCTCGTTCATGACGATTGTTTCTCGAGGTGGAAACGAAGCAAGGGAAGGAGAAATATTAGCTGCGTAGTTTGTAGGGCAAGATGGAAGGACACGACAAACGAACAAAACCAAAGGCGCAGCAGCTTTCATCAATCTCACACTGACAAATTTGATCCGTTGCGCACTCCTAAGTCTGAATTCCTACTGTTTCCCTGCTTTCGTGGCCGAAGTTTTGTGCTAGGATACGCAATGGAGGATTCCGGGACCGGAACTCGACCTTCTTCCGGTAAGGTATCGGCTAAAGTCGTCGCTATTGCTGCTGGTGAAGCTCACACTCTCGCTCTTACAGGAGATGGGAGAGTGTATTCATGGGGAAGAGGAATATTTGGGCGGCTTGGGACGGGGACGGAAGCGGACGAGATTTTACCTGTACGAGTTAAGCTTGGTTCTGAGGAAGTGAATCTCAAAGTTGTGGCGATTGCTGCTGGTTCTTATCATAGCCTCGCTCTTGCTGATAGAGCTTGTTTTGCTTCAACAGCTGCGAAATTGTTTGGTTTGGAGCTGGGGTTACAACATCTGTATCCTTTGAAATGGTTTTATCCTCTCTACATCCTTGACTATCACAAAGATGGCCAACTTGGATTTGATGGAGGAAATTCCGCTACCCCGTGCTTGCTGAAGCAGTTTCTTGAGTTGGAATCTCCAGATTCTTCGACAGACGAGTCAGGCTCGAAGAATAAGAGGTCAAAAACGATTTGTGACGTCAAAGCCGGGGGGTTGGTCTCACTTGCAATCGACGATCTCGGAGCCCTATGGATGTGGGGTAATTGTCCAAAGCCAAACGGTGAGGACGAAGTTGGCTTATCTTATGTTAGCAGCTTCACTCCCTCTCCAGTGTCGGAGCTCCATGGCCATACTGTTGTTAAGGTTGCTTGTGGTAATGAGCATGTGGTGGCCCTGGTTAGTGTTGGGGCAACCTACAATAAAGATGAAGATTTAGTTTGCTACTCATGGGGAAATAATTCTCATGGCCAATTAGGCACGGGAGATAGAGATGGCAGGGCACGTCCCCAACTTATCGAGACATTTAACGAGGCATCCCCTTGGGCAGTTTATGAGGTAGCGTGCGGGGCATTCCATACTGCTTTACTTAGCCGCAGAAAGGGACCAAGTGACACTTTAGAAAGTGTATGTTGGACATTTGGTATAGGGGAAAATGGGCAGCTTGGACATGGAACTACCCAAAATGAATTGCTTCCTAAGCCTGTAAAAGAATTGCCGCAATCTGTATCTCTGATCTCAGTTGCTTGTGGCCTTTTTCACACGAGCGTTGTTTCATCAGCTGGAGATGTATGGTCCTGGGGAATGGAAAGGGGACTTGGACTTTGCCCTGATGCTAGTTTCACTGGGACCGACACAGGCGATGCGATTTCTCCCCTATCCATCTTTTGTAATGGGTCTCAATCTCCAAAATTCTTGGATCCTGTTCAGGTTGCTTGTGGGGCTGCTCATACCATCATTGTTGCACATAATGGATATAAGCTATGGTCATGGGGACGAGGAAGAAGCGGGGTTCTTGGAAATGGTAAGACAGTCGATTGTTATACTCCCACCGTCGTGTCGTGGCCTCCACCCGGCGAGGATTTCATTCAAGAGGAAATAGAAACCAAAAACACGGAAGATAAAGTCGAAGAAGATAGTACCGAGGACGTAACCGAAGAAAACAAAAAATTGCTTATGGCTATGGAGGAAATCAAAGTTCTGCTAGAGAAACTGTCTGTTATGGAACGGTATGCAAGCTTTCTTCATGGCTCCATATTTGGAAAACCTTTCCAAGAAGGAGATATCCCACTCTCATTGCGAAATTCTGGTATGTTCGACATTGCCAAGGAATGGGAAAGCCTTTTCGAGTCGATAGATCGCAAAGATCTACTAAGGATGGAGGCAGTCTACCAACACATGCTGGCAACTATCAAGGACAAGATCATGAAGAAAAGGGTCCAGGAGCTTGTGAACGAATTTGGAAGAAGAATTGGAAGATTTGATATAGATGATTGTAACTTTGAAGGTAAAGAAGAGAAGGTTTGA 4992 46.57 MPELRRKPRRSRVSEDPIPIVHQTPVKLTVRTRHRGKPAKRGGEKCIKEGNDAIDADGERDIVNPGIGLETSKGEVGKNKELLEVGVKAMDEFDSGGRNGDKGPKAEDESTAAPLPEKVQVGGSPLYKVERKLGKGGFGQVYVGRRMGPTSLNERSGSGAVEIALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNAHTMSIEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPEEKKLFLVDLGLATKWRDSSTGQHVEYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVSKKKMSTSSETLCCFCPQPFRQFVEYVVNLKFDEEPNYARYISLFDGIVGPNPDIHPINTDGAQKVGQKRGRLSMEDEDDEQPKKKVRMGMPATQWISVYNARKPMKQRYHYNVADMRLSQHIEKGNEDGLFISCVASCSNLWALIMDAGTGFTAQVYELSPCFLHKDWIMEQWEKNYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGVHRRWDSGYRITSTAATLDQAALVLSVPRRKPTDETQETLRTSAFPSTHVKLADDLWLVPIRYFCGYLLGLLILFVNIGMAVNYTRFPFSEPEERLPSGFRVPSVATSSRVKELDNLCYSFCFRYRLQPRALPTVITNQASQAYEFSAHFPSLRHQTYPSRFPQSYTKNRVVYLPLYMYVVRGIAFQILMESVASTSSAPDRPRPRLPWFEPSQAMTARIVRALHHHLRLLHRSDSSFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHMLFVYIRALGVSLDDACLWRRTLRPCQLNRLLTAPVMAESLAEISLRRVKERTCVPIVDIEDGAACPVCLDDLKDDRVVACTTCRNLVHDDCFSRWKRSKGRRNISCVVCRARWKDTTNEQNQRRSSFHQSHTDKFDPLRTPKSEFLLFPCFRGRSFVLGYAMEDSGTGTRPSSGKVSAKVVAIAAGEAHTLALTGDGRVYSWGRGIFGRLGTGTEADEILPVRVKLGSEEVNLKVVAIAAGSYHSLALADRACFASTAAKLFGLELGLQHLYPLKWFYPLYILDYHKDGQLGFDGGNSATPCLLKQFLELESPDSSTDESGSKNKRSKTICDVKAGGLVSLAIDDLGALWMWGNCPKPNGEDEVGLSYVSSFTPSPVSELHGHTVVKVACGNEHVVALVSVGATYNKDEDLVCYSWGNNSHGQLGTGDRDGRARPQLIETFNEASPWAVYEVACGAFHTALLSRRKGPSDTLESVCWTFGIGENGQLGHGTTQNELLPKPVKELPQSVSLISVACGLFHTSVVSSAGDVWSWGMERGLGLCPDASFTGTDTGDAISPLSIFCNGSQSPKFLDPVQVACGAAHTIIVAHNGYKLWSWGRGRSGVLGNGKTVDCYTPTVVSWPPPGEDFIQEEIETKNTEDKVEEDSTEDVTEENKKLLMAMEEIKVLLEKLSVMERYASFLHGSIFGKPFQEGDIPLSLRNSGMFDIAKEWESLFESIDRKDLLRMEAVYQHMLATIKDKIMKKRVQELVNEFGRRIGRFDIDDCNFEGKEEKV 1663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1306455 1318585 + CmoCh12G002000.1 Cmo12g00200 392888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00200 1663 ProSiteProfiles Zinc finger SWIM-type profile. 868 898 IPR007527 GO:0008270
Cmo12g00200 1663 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 1342 1352 IPR000408 -
Cmo12g00200 1663 PRINTS Chromosome condensation regulator RCC1 signature 1088 1104 IPR000408 -
Cmo12g00200 1663 PRINTS Chromosome condensation regulator RCC1 signature 1406 1424 IPR000408 -
Cmo12g00200 1663 PRINTS Chromosome condensation regulator RCC1 signature 1278 1294 IPR000408 -
Cmo12g00200 1663 PRINTS Chromosome condensation regulator RCC1 signature 1476 1497 IPR000408 -
Cmo12g00200 1663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Cmo12g00200 1663 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 1237 1291 IPR000408 -
Cmo12g00200 1663 SUPERFAMILY RCC1/BLIP-II 1060 1139 IPR009091 -
Cmo12g00200 1663 SUPERFAMILY RING/U-box 948 1014 - -
Cmo12g00200 1663 PANTHER CASEIN KINASE-RELATED 98 664 - -
Cmo12g00200 1663 SUPERFAMILY RCC1/BLIP-II 1175 1511 IPR009091 -
Cmo12g00200 1663 SUPERFAMILY Protein kinase-like (PK-like) 127 409 IPR011009 -
Cmo12g00200 1663 MobiDBLite consensus disorder prediction 94 112 - -
Cmo12g00200 1663 Gene3D - 1042 1298 IPR009091 -
Cmo12g00200 1663 Gene3D - 1299 1548 IPR009091 -
Cmo12g00200 1663 Pfam Regulator of chromosome condensation (RCC1) repeat 1304 1352 IPR000408 -
Cmo12g00200 1663 Pfam Regulator of chromosome condensation (RCC1) repeat 1483 1512 IPR000408 -
Cmo12g00200 1663 Pfam Regulator of chromosome condensation (RCC1) repeat 1086 1138 IPR000408 -
Cmo12g00200 1663 Pfam Regulator of chromosome condensation (RCC1) repeat 1367 1412 IPR000408 -
Cmo12g00200 1663 PANTHER CASEIN KINASE 1-LIKE PROTEIN HD16 98 664 - -
Cmo12g00200 1663 MobiDBLite consensus disorder prediction 90 118 - -
Cmo12g00200 1663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 947 1017 IPR013083 -
Cmo12g00200 1663 Pfam Protein kinase domain 127 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00200 1663 Gene3D Transferase(Phosphotransferase) domain 1 96 454 - -
Cmo12g00200 1663 MobiDBLite consensus disorder prediction 32 59 - -
Cmo12g00200 1663 ProSiteProfiles Zinc finger RING-type profile. 955 1000 IPR001841 -
Cmo12g00200 1663 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 1301 1355 IPR000408 -
Cmo12g00200 1663 MobiDBLite consensus disorder prediction 415 445 - -
Cmo12g00200 1663 ProSitePatterns Protein kinases ATP-binding region signature. 133 166 IPR017441 GO:0005524
Cmo12g00200 1663 Pfam Ring finger domain 954 1000 IPR001841 -
Cmo12g00200 1663 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 1417 1479 IPR000408 -
Cmo12g00200 1663 MobiDBLite consensus disorder prediction 428 445 - -
Cmo12g00200 1663 SMART serkin_6 127 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00200 1663 MobiDBLite consensus disorder prediction 42 59 - -
Cmo12g00200 1663 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 1364 1416 IPR000408 -
Cmo12g00200 1663 ProSiteProfiles Protein kinase domain profile. 127 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00200 1663 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 1087 1141 IPR000408 -
Cmo12g00200 1663 CDD STKc_CK1 127 403 - -
Cmo12g00200 1663 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 1043 1086 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00200 - - - csv:101218249 1261.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00696 Cmo-Chr8:4424230 Cmo12g00200 Cmo-Chr12:1306455 0 dispersed
Cmo12g00200 Cmo-Chr12:1306455 Cmo17g00739 Cmo-Chr17:7347219 0 dispersed
Cmo05g00614 Cmo-Chr5:3067453 Cmo12g00200 Cmo-Chr12:1306455 1.14E-90 transposed
Cmo12g00200 Cmo-Chr12:1306455 Cmo05g00613 Cmo-Chr5:3060231 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g285 . . . . . . . . . Cmo12g00200 . . . Car12g00233 . Cpe07g00211 . . . . . . . . . . . . . . . . . . . . . . Cme03g01749 Blo17g00065 . . Bda13g01328 . . . . . . . . Cma12g00248 . . . . . . . . . . . Cla08g01218 Cam08g1677 Cec08g1255 Cco08g1375 Clacu08g1375 . Cre08g1160 Lsi08g01081 . Chy03g01253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000235 6 9 5 7 6 4 9 4 4 5 4 4 8 4 4 7 4 6 8 4 4 4 4 4 4 4 4 11 5 5 161
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74713 PF00069 Pkinase 4.10E-15 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00200 Cmo_Chr12 FPKM 3.677823 4.868967 0.217947 0.0 7.085194 8.548753 7.961751 0.422215 0.152195 0.0