Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00206 ATGAGCTCTGACTCGAACGCTGTTCCAAAGAAAATCAAGCGCATCAGAAACCCAGAATCCAATTCCGATTCGAATTCCAGCAAGCACCCAGTTTACAGAGGCGTCCGGATGCGAAACTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGAAAGAAATCCCGCATTTGGTTAGGAACTTTCCCCAGCCCTGAAATGGCAGCTCGAGCCCACGACGTCGCCGCCTTAAGCATCAAAGGCAACTCCGCCATCCTTAATTTCCCCGACCTCGTCCACCTCCTCCCCCGCCCTGTCTCTCTCGCCCCTCGCGACATCCAAGCCGCCGCCACCCAAGCCGCCCACATGCACAATCTATCTCCTAACAACATTCCCACCACCGCCACCACCACCGACGACACTTCCGACGCCTCCGATGAACTCACCGAAATCGTCCAGCTTCCCTCTCTCGGCACCACCTACGACGGCGACTGCGGCGACTCCTTCGTTTTCCTTGACTACTCAACAGAGGATTCCGCCGCCTGGCTTTACCCACCGCCGTGGCTACCATCTCTCGAGGATTACGACGAAATTCAAAACGACGGTAAGATGGGAATGGGAATGGGATTCATTTCCACCAATTTCAAAGGATTACTGTGGGATTATTAA 645 54.88 MSSDSNAVPKKIKRIRNPESNSDSNSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDIQAAATQAAHMHNLSPNNIPTTATTTDDTSDASDELTEIVQLPSLGTTYDGDCGDSFVFLDYSTEDSAAWLYPPPWLPSLEDYDEIQNDGKMGMGMGFISTNFKGLLWDY 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1361052 1361696 - CmoCh12G002060.1 Cmo12g00206 392894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00206 214 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Cmo12g00206 214 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Cmo12g00206 214 MobiDBLite consensus disorder prediction 1 30 - -
Cmo12g00206 214 CDD AP2 32 90 IPR001471 GO:0003700|GO:0006355
Cmo12g00206 214 Pfam AP2 domain 30 80 IPR001471 GO:0003700|GO:0006355
Cmo12g00206 214 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Cmo12g00206 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 214 - -
Cmo12g00206 214 PANTHER DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 12 214 - -
Cmo12g00206 214 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Cmo12g00206 214 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Cmo12g00206 214 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01487 Cmo-Chr1:11520959 Cmo12g00206 Cmo-Chr12:1361052 1.13E-67 dispersed
Cmo06g00995 Cmo-Chr6:7822336 Cmo12g00206 Cmo-Chr12:1361052 8.58E-43 dispersed
Cmo08g00153 Cmo-Chr8:893386 Cmo12g00206 Cmo-Chr12:1361052 2.19E-40 dispersed
Cmo10g00689 Cmo-Chr10:3142161 Cmo12g00206 Cmo-Chr12:1361052 5.13E-65 dispersed
Cmo11g00649 Cmo-Chr11:3103445 Cmo12g00206 Cmo-Chr12:1361052 1.04E-60 dispersed
Cmo12g00206 Cmo-Chr12:1361052 Cmo12g01298 Cmo-Chr12:11419240 3.34E-50 dispersed
Cmo14g02216 Cmo-Chr14:15740659 Cmo12g00206 Cmo-Chr12:1361052 3.40E-45 dispersed
Cmo16g00158 Cmo-Chr16:718294 Cmo12g00206 Cmo-Chr12:1361052 1.05E-36 dispersed
Cmo17g00495 Cmo-Chr17:3914971 Cmo12g00206 Cmo-Chr12:1361052 3.93E-42 dispersed
Cmo09g01204 Cmo-Chr9:9111892 Cmo12g00206 Cmo-Chr12:1361052 4.82E-30 transposed
Cmo12g00206 Cmo-Chr12:1361052 Cmo05g00619 Cmo-Chr5:3104970 5.56E-75 wgd
Cmo12g00206 Cmo-Chr12:1361052 Cmo09g00617 Cmo-Chr9:3084770 1.45E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10701 PF00847 AP2 5.00E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00206 K09286 - csv:101206242 283.878