Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00208 ATGTTTGGGCTTTTTAACCCAAATGTTGACTATTGTGGGCCTATTGGGCTGACAGTCCTTCTCCCAGTATTCATAGGCCCGGCGGCGCCACCTCTCTGCCTCCTCTACTTCGCCATCTCTCTCTCTGATACTCGCTCACTCCATTCTCTTGACCAGTTATTCTTTTCCTTTCTAATCGTTTTAAATCACCGGAGAAAGACCATGGAGATAGACAGAGATGATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCTCAAGGCGACACGAAAATTCTCGCTGCAGTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGAAAACTGGAAAGGGAGTGTGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACGACATCTATTGTAGTTCAGGTTATTCATGATGATGGAGCTGTATCCCTTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCCTTAAAGCATCTTGCTGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAAAATGAAGGCATCAGTACATTTGGTCTTTCCGAACTCACCTGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGCAGGCGAACCTCTGGAGAATGGAATAATAACATCTTTAACTCAGGGTGCAATGTCAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGTCAGCTTTTTTGAGGAGAAGCTTGCAGCCTCAACTCCCAACGGATTCCTCAAAAGTCGGGTGA 942 44.06 MFGLFNPNVDYCGPIGLTVLLPVFIGPAAPPLCLLYFAISLSDTRSLHSLDQLFFSFLIVLNHRRKTMEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1370979 1375449 + CmoCh12G002080.1 Cmo12g00208 392896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00208 313 SUPERFAMILY Ribonuclease PH domain 2-like 203 303 IPR036345 -
Cmo12g00208 313 PANTHER EXOSOME COMPLEX COMPONENT RRP46 68 303 - -
Cmo12g00208 313 PANTHER EXOSOME COMPLEX COMPONENT 68 303 - -
Cmo12g00208 313 Gene3D - 68 311 IPR027408 -
Cmo12g00208 313 SUPERFAMILY Ribosomal protein S5 domain 2-like 79 202 IPR020568 -
Cmo12g00208 313 Pfam 3' exoribonuclease family, domain 2 206 286 IPR015847 -
Cmo12g00208 313 Pfam 3' exoribonuclease family, domain 1 80 203 IPR001247 -
Cmo12g00208 313 CDD RNase_PH_RRP46 81 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00208 K12590 RRP46, EXOSC5; exosome complex component RRP46 - csv:101205616 456.447
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00208 Cmo-Chr12:1370979 Cmo20g00530 Cmo-Chr20:2565634 9.41E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g295 . . . . Bpe02g01180 . . . . Cmo12g00208 . . . Car12g00239 Sed12g1115 Cpe07g00218 . Bhi04g00842 Tan02g2563 Cmetu04g1511 . Hepe10g0359 . . . . . . . . . . . Cone17ag1121 . . . . Cme03g01739 . . Bda01g00935 . . . . . . . . . Cma12g00255 . . . . . . . . . . . Cla08g01225 Cam08g1684 Cec08g1263 Cco08g1383 Clacu08g1382 . Cre08g1167 Lsi08g01088 . Chy03g01246 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012378 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00208 Cmo_Chr12 FPKM 0.0 0.014304 0.152315 0.532155 0.253687 0.0 0.0 0.424239 0.267588 1.210337