Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00210 ATGGCCAAAATTGCATTGGGATGCGTTGGCGAGGCGACTCAGCCCGACTGCATCCGAGCCCTCGTTGTCGAGTTCATCACCACCTTCCTCTTCGTCTTTGTTGGTGTCGGATCAGCCATAACTGCTAATACACTACTAGGAAATGCACTCGTGGGATTGTTCTCTGTCGCTGTCGCACATGCACTGGTCGTGGCTGTGATGATCTCCGCCGGACACATTTCCGGTGGTCACCTAAACCCCGCCGTCACACTCGGTCTCCTTTTTGGTGGTCATATCACAGTTGTCCGATCCGCTTTATATTGGATCATTCAGTTGCTAGCAGCGTCTGCGGCTAGTTTTCTCTTATCGTACCTCACCGGAGGCTCCGCTATTCCAGTTCACACATTAGCAAGTGGAGTTGGCTATCTTCAGGGAGTGATATGGGAGATTATTCTCACCTTCTCCTTGCTGTTCACTGTGTACGCAACAATGGTTGATCCAAAGAAGGGAGCTCTTGATGGGTTGGGTCCAATGTTGACTGGGTTCGTGGTGGGGGCTAACATCTTGGCTGGTGGGGCCTTTTCTGGAGCTTCAATGAACCCAGCAAGATCATTTGGCCCAGCTTTGGTGGCTGGAGACTGGACTGACCACTGGGTTTACTGGGTTGGACCCCTTATTGGTGGTGGACTTGCAGGGTTCATCTATGAAAATTTCTTCATTGAGAGGTCTCATGTGCCTCTGCCTAGGGCAGAGGCTGAGTATTGA 744 51.34 MAKIALGCVGEATQPDCIRALVVEFITTFLFVFVGVGSAITANTLLGNALVGLFSVAVAHALVVAVMISAGHISGGHLNPAVTLGLLFGGHITVVRSALYWIIQLLAASAASFLLSYLTGGSAIPVHTLASGVGYLQGVIWEIILTFSLLFTVYATMVDPKKGALDGLGPMLTGFVVGANILAGGAFSGASMNPARSFGPALVAGDWTDHWVYWVGPLIGGGLAGFIYENFFIERSHVPLPRAEAEY 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1376613 1377684 - CmoCh12G002100.1 Cmo12g00210 392898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00210 247 Pfam Major intrinsic protein 12 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo12g00210 247 PANTHER AQUAPORIN TIP4-1 2 245 - -
Cmo12g00210 247 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Cmo12g00210 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo12g00210 247 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo12g00210 247 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo12g00210 247 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo12g00210 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo12g00210 247 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo12g00210 247 SUPERFAMILY Aquaporin-like 13 241 IPR023271 -
Cmo12g00210 247 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Cmo12g00210 247 PANTHER AQUAPORIN-8 2 245 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00210 Cmo-Chr12:1376613 Cmo14g00225 Cmo-Chr14:1039713 2.57E-79 dispersed
Cmo12g00210 Cmo-Chr12:1376613 Cmo03g01198 Cmo-Chr3:9354988 5.42E-81 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00210 K09873 - csv:101205380 429.483