Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00218 ATGGAGAATTCTTCTCTCGATCAAGAGACCGCCAAGAAAGTGCTTCGTCAGGTCGAGTTCTATTTCAGCGACAGTAATCTTCCTAGAGATGGTTTTCTTAAGAAAACTATTGGCGCAAGCCCCGATGGAATGGTGGATTTGTCTTTAGTTTGTTCGTTTTCTCGGATGAAAGGCCATCTTCATTTGGCTCAGGACGTGAAACCGGACGCGATTCCAGAAGATACTGTAAAAGCTGTTGCTGAAACTTTGAAAAGCTCTTCAACTATCAAAGTTTCTGAAGATGGGAAGAAGATTGGTAGAATTGCTGAACTCTCAAAGCCTGAGGAGATGCTAGAGCAATTGGATGATAGAACCATTGCTGCATCGCCGTTTCAATATGATGTCAAGCTTGAAGATGTAGAAGCTTTTTTTGGTCAAATCGCGAAGGTAGATTCTTTGTTGTTATCGATTCATCGTTCATGTCAGAATGCCCTTGGGTTTAGATATAATTTTCCCACTGATCTTCAGGTCAACAGTGTGAGGTTGCCCCGCCATGTTTCGGATAAACGTGTATTCTGTGGAACTGCCTTGGTAGAATTTTCTGCTGAAGAAGATGCAGAAAAAGTATTGACGGAAAGCTTGCTTTATGCTGGTGCCAAGTTAGAATTAAAATCAAAGAGGGATTTTGATGAGGAGAGATCAAAAGAGACGGAGAAGTTTGAAAGTTCACGCTCGAACGCAAGTTCAAACTGGAAGAACAATAATTCCTCGGAATCAAACTACCCGAAAGGCTTAATTGTTGCCTTTGCACTGAAAAAGATGACAGCCGGAAGTTCTGCTGAGGAAAATGGATCTCATGATGTAACCACTGATAAGACTGAATGCAAAACAGACGAAGGATTAGATTCTTCAAAGAATGACTCTGAGAAAACTGAGCAAACAGGGGGAGAAAACGTGGGTAAAGATGAAGAAATCCAGAAGAGTTCTGATGATAAGATCGAAGAAGCTGATAAGAAAAATGATTCAGGCAATGAAGAAAAACCTGAAGTGGAAGATCAGTCTATGGATGATCCCACCGACGAACGTGAAGAGGCTGAAGAAAAACCCACATTTGCCTCATCTAGAAACGACAAGAACGTTGTTTCACGCGAGGATTTGAAGGCTATTTTTCAGAAGTTCGGAAGTATCAAGAATATTTATTGTTCTATTTCGACTTTGAATCATGCTTTTGATGTTCGTATTGCTTTACTGTTTTCAGTTCATATATGCATGCCAATTCTGACACATCTTCATCTTCCTCTTGTTTTACTCTCTTTCTGTTCATTGGTTGGGATGATGAAGTACATTGATTTTAAGATGGGGGAAGAGTCTGGTTATATCAGGTTTGATGAGCCTGAAGCTGCCCAGAAGGCTCGTGCGGCTGCAGTCCTTGCTGATCAAGGAGGATTGGCTGTGAAGAATTTTATAGCCACTTTAGAACCAGTTTCAGGTACCATACATTCTTCCACTGTCCTTTGA 1497 41.08 MENSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKKTIGASPDGMVDLSLVCSFSRMKGHLHLAQDVKPDAIPEDTVKAVAETLKSSSTIKVSEDGKKIGRIAELSKPEEMLEQLDDRTIAASPFQYDVKLEDVEAFFGQIAKVDSLLLSIHRSCQNALGFRYNFPTDLQVNSVRLPRHVSDKRVFCGTALVEFSAEEDAEKVLTESLLYAGAKLELKSKRDFDEERSKETEKFESSRSNASSNWKNNNSSESNYPKGLIVAFALKKMTAGSSAEENGSHDVTTDKTECKTDEGLDSSKNDSEKTEQTGGENVGKDEEIQKSSDDKIEEADKKNDSGNEEKPEVEDQSMDDPTDEREEAEEKPTFASSRNDKNVVSREDLKAIFQKFGSIKNIYCSISTLNHAFDVRIALLFSVHICMPILTHLHLPLVLLSFCSLVGMMKYIDFKMGEESGYIRFDEPEAAQKARAAAVLADQGGLAVKNFIATLEPVSGTIHSSTVL 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1430385 1433122 - CmoCh12G002180.1 Cmo12g00218 392906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00218 498 MobiDBLite consensus disorder prediction 221 252 - -
Cmo12g00218 498 PANTHER LUPUS LA PROTEIN-RELATED 437 491 IPR045180 -
Cmo12g00218 498 Gene3D - 110 234 IPR012677 -
Cmo12g00218 498 PANTHER OS02G0610400 PROTEIN 437 491 - -
Cmo12g00218 498 SMART la 8 101 IPR006630 -
Cmo12g00218 498 Pfam RNA binding motif 434 490 IPR014886 GO:0003723
Cmo12g00218 498 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cmo12g00218 498 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Cmo12g00218 498 Gene3D - 2 105 IPR036388 -
Cmo12g00218 498 Coils Coil 326 346 - -
Cmo12g00218 498 SUPERFAMILY Winged helix DNA-binding domain 8 101 IPR036390 -
Cmo12g00218 498 PANTHER LUPUS LA PROTEIN-RELATED 168 396 IPR045180 -
Cmo12g00218 498 PANTHER LUPUS LA PROTEIN-RELATED 4 151 IPR045180 -
Cmo12g00218 498 Gene3D - 428 492 IPR012677 -
Cmo12g00218 498 Pfam La domain 14 84 IPR006630 -
Cmo12g00218 498 PANTHER OS02G0610400 PROTEIN 168 396 - -
Cmo12g00218 498 PANTHER OS02G0610400 PROTEIN 4 151 - -
Cmo12g00218 498 SUPERFAMILY RNA-binding domain, RBD 109 207 IPR035979 GO:0003676
Cmo12g00218 498 MobiDBLite consensus disorder prediction 271 370 - -
Cmo12g00218 498 ProSiteProfiles La-type HTH domain profile. 4 108 IPR006630 -
Cmo12g00218 498 MobiDBLite consensus disorder prediction 236 252 - -
Cmo12g00218 498 ProSiteProfiles xRRM domain profile. 358 498 IPR014886 GO:0003723
Cmo12g00218 498 MobiDBLite consensus disorder prediction 221 235 - -
Cmo12g00218 498 CDD LA_like_plant 10 100 - -
Cmo12g00218 498 MobiDBLite consensus disorder prediction 278 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00218 K11090 LA, SSB; lupus La protein - csv:101204162 566.229
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00630 Cmo12g00218 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00218 Cmo-Chr12:1430385 Cmo19g00443 Cmo-Chr19:5406865 3.48E-13 dispersed
Cmo12g00218 Cmo-Chr12:1430385 Cmo05g00630 Cmo-Chr5:3168035 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g328 . . . . . . . . Cmo05g00630 Cmo12g00218 . Cma05g00604 . Car12g00248 Sed01g1286 Cpe07g00227 . Bhi04g00824 Tan02g2579 Cmetu03g0669 . Hepe10g0345 . Lcy13g1390 . . . . . . . . . . . . . . Cme03g01728 . . . Bda13g01316 Bpe14g00532 . . Bma02g00072 . . . . Cma12g00264 . Car05g00546 Cpe11g00527 . . . . . . . . Cla08g01236 Cam08g1693 Cec08g1272 Cco08g1393 Clacu08g1390 . Cre08g1175 Lsi08g01099 . Chy03g01232 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009894 1 1 0 1 1 1 2 1 0 1 1 0 2 1 1 2 1 3 2 0 1 1 1 0 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00218 Cmo_Chr12 FPKM 4.406229 3.251817 0.183295 0.115627 3.941444 3.877419 5.984879 0.0 0.0 0.0