Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00224 ATGAAGCGCAGCGCCTCCGAGTTGGCTCTTGAAGAGCTCCTCGAAACGACAGCCATCGCCTCTCCAGAAGTCATCGACGCCGAGGCTGACGACGAGTTACAAAACGACAACGTTTTCAAAACCGAACACGAAGTCATCTCCCGGAGCCCTAAAAGAAGCAAGAACTTCCAGGACTCCGCCGATGCGTGCAGCTTCTTCGGCGATATCGATTTCAATTTCTTCTTGAGAAATAATCGGGAGATAATGGACGCGATTGCTAACTGTGGAGGTGGGGTGGCGGAGGGTCCTTTATGGGCACAGAATCTCACACCTAAGCTCTCGACCATTTCAGCCACTATAGATTCCCAGTCTTCTATTGTGAGCAGCCCAACATCAGCTAGCAATTTGATGGGCAGAGAGCACCAAAGAGGCGCCAACAGCGGGTCCTCCGAGGATCAATCGGACGATGAGATTGAGGCTGGGTCTTGTGAGCAAAGCAATGACCCTCTTACTTTGAAGAAGATCAGAAGAATGATCTCTAATAGGGACTCGGCTAGACGGTCGAGACGACGAAAACAAGCTCATTTGGCTGAACTCGAGAGTCAGGTGAAACAACTTAAAGTAGAAAACGAAACGTTGTTCAACCAGCTTTTAGATGCAAGTCAGCAATACCGTGATGCCAATACAAACAACCGAGTGCTTAAATCAGACGTGGATGCGATGAGAGCCAAGGTAAAGTTAGCTGAAGATACACTCGCTAGAGGCTCAATGACCAGTAGCTTGAACCAGCTCCTACAGAATCATTTGAGCACGCCGCAGCCACTAACCGTGCTGCGGCGGATGTCGAATATCCCATTGCCACTCGGTCTTCCCGGAGACGACGTTTCTTATTCTGGCGTGACAATGTCGAGCCAGAACCCAGCCACCCGGCTCGCAGAAACTGGAATGGCTAGTGAGGCTGTTAGCTGTGTGTCTGAGATTTGGCCTAGAAATTAG 975 50.15 MKRSASELALEELLETTAIASPEVIDAEADDELQNDNVFKTEHEVISRSPKRSKNFQDSADACSFFGDIDFNFFLRNNREIMDAIANCGGGVAEGPLWAQNLTPKLSTISATIDSQSSIVSSPTSASNLMGREHQRGANSGSSEDQSDDEIEAGSCEQSNDPLTLKKIRRMISNRDSARRSRRRKQAHLAELESQVKQLKVENETLFNQLLDASQQYRDANTNNRVLKSDVDAMRAKVKLAEDTLARGSMTSSLNQLLQNHLSTPQPLTVLRRMSNIPLPLGLPGDDVSYSGVTMSSQNPATRLAETGMASEAVSCVSEIWPRN 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1477915 1481111 - CmoCh12G002240.1 Cmo12g00224 392912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00224 324 Pfam bZIP transcription factor 164 210 IPR004827 GO:0003700|GO:0006355
Cmo12g00224 324 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 164 227 IPR004827 GO:0003700|GO:0006355
Cmo12g00224 324 SMART brlzneu 162 226 IPR004827 GO:0003700|GO:0006355
Cmo12g00224 324 MobiDBLite consensus disorder prediction 114 162 - -
Cmo12g00224 324 SUPERFAMILY Leucine zipper domain 165 212 IPR046347 GO:0003700|GO:0006355
Cmo12g00224 324 MobiDBLite consensus disorder prediction 114 144 - -
Cmo12g00224 324 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 169 184 IPR004827 GO:0003700|GO:0006355
Cmo12g00224 324 Gene3D - 165 220 - -
Cmo12g00224 324 PANTHER BASIC LEUCINE ZIPPER 63 1 322 - -
Cmo12g00224 324 PANTHER BASIC LEUCINE ZIPPER 9 1 322 - -
Cmo12g00224 324 Coils Coil 175 216 - -
Cmo12g00224 324 CDD bZIP_plant_GBF1 184 218 IPR045314 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00224 Cmo-Chr12:1477915 Cmo12g01140 Cmo-Chr12:10373201 4.98E-27 dispersed
Cmo12g00224 Cmo-Chr12:1477915 Cmo05g00637 Cmo-Chr5:3219862 4.35E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10704 PF00170 bZIP_1 1.40E-13 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00224 K25784 - csv:101210908 428.328