Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g00224 | ATGAAGCGCAGCGCCTCCGAGTTGGCTCTTGAAGAGCTCCTCGAAACGACAGCCATCGCCTCTCCAGAAGTCATCGACGCCGAGGCTGACGACGAGTTACAAAACGACAACGTTTTCAAAACCGAACACGAAGTCATCTCCCGGAGCCCTAAAAGAAGCAAGAACTTCCAGGACTCCGCCGATGCGTGCAGCTTCTTCGGCGATATCGATTTCAATTTCTTCTTGAGAAATAATCGGGAGATAATGGACGCGATTGCTAACTGTGGAGGTGGGGTGGCGGAGGGTCCTTTATGGGCACAGAATCTCACACCTAAGCTCTCGACCATTTCAGCCACTATAGATTCCCAGTCTTCTATTGTGAGCAGCCCAACATCAGCTAGCAATTTGATGGGCAGAGAGCACCAAAGAGGCGCCAACAGCGGGTCCTCCGAGGATCAATCGGACGATGAGATTGAGGCTGGGTCTTGTGAGCAAAGCAATGACCCTCTTACTTTGAAGAAGATCAGAAGAATGATCTCTAATAGGGACTCGGCTAGACGGTCGAGACGACGAAAACAAGCTCATTTGGCTGAACTCGAGAGTCAGGTGAAACAACTTAAAGTAGAAAACGAAACGTTGTTCAACCAGCTTTTAGATGCAAGTCAGCAATACCGTGATGCCAATACAAACAACCGAGTGCTTAAATCAGACGTGGATGCGATGAGAGCCAAGGTAAAGTTAGCTGAAGATACACTCGCTAGAGGCTCAATGACCAGTAGCTTGAACCAGCTCCTACAGAATCATTTGAGCACGCCGCAGCCACTAACCGTGCTGCGGCGGATGTCGAATATCCCATTGCCACTCGGTCTTCCCGGAGACGACGTTTCTTATTCTGGCGTGACAATGTCGAGCCAGAACCCAGCCACCCGGCTCGCAGAAACTGGAATGGCTAGTGAGGCTGTTAGCTGTGTGTCTGAGATTTGGCCTAGAAATTAG | 975 | 50.15 | MKRSASELALEELLETTAIASPEVIDAEADDELQNDNVFKTEHEVISRSPKRSKNFQDSADACSFFGDIDFNFFLRNNREIMDAIANCGGGVAEGPLWAQNLTPKLSTISATIDSQSSIVSSPTSASNLMGREHQRGANSGSSEDQSDDEIEAGSCEQSNDPLTLKKIRRMISNRDSARRSRRRKQAHLAELESQVKQLKVENETLFNQLLDASQQYRDANTNNRVLKSDVDAMRAKVKLAEDTLARGSMTSSLNQLLQNHLSTPQPLTVLRRMSNIPLPLGLPGDDVSYSGVTMSSQNPATRLAETGMASEAVSCVSEIWPRN | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 1477915 | 1481111 | - | CmoCh12G002240.1 | Cmo12g00224 | 392912 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g00224 | 324 | Pfam | bZIP transcription factor | 164 | 210 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo12g00224 | 324 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 164 | 227 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo12g00224 | 324 | SMART | brlzneu | 162 | 226 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo12g00224 | 324 | MobiDBLite | consensus disorder prediction | 114 | 162 | - | - | |
Cmo12g00224 | 324 | SUPERFAMILY | Leucine zipper domain | 165 | 212 | IPR046347 | GO:0003700|GO:0006355 | |
Cmo12g00224 | 324 | MobiDBLite | consensus disorder prediction | 114 | 144 | - | - | |
Cmo12g00224 | 324 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 169 | 184 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo12g00224 | 324 | Gene3D | - | 165 | 220 | - | - | |
Cmo12g00224 | 324 | PANTHER | BASIC LEUCINE ZIPPER 63 | 1 | 322 | - | - | |
Cmo12g00224 | 324 | PANTHER | BASIC LEUCINE ZIPPER 9 | 1 | 322 | - | - | |
Cmo12g00224 | 324 | Coils | Coil | 175 | 216 | - | - | |
Cmo12g00224 | 324 | CDD | bZIP_plant_GBF1 | 184 | 218 | IPR045314 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo12g00224 | Cmo-Chr12:1477915 | Cmo12g01140 | Cmo-Chr12:10373201 | 4.98E-27 | dispersed | |
Cmo12g00224 | Cmo-Chr12:1477915 | Cmo05g00637 | Cmo-Chr5:3219862 | 4.35E-147 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10704 | PF00170 | bZIP_1 | 1.40E-13 | CL0018 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g00224 | K25784 | - | csv:101210908 | 428.328 |