Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00227 ATGTGGCGGTCGCCGGTGCAGAGTGGCACGGAGGTGTTCCAGTTGGATAATGCGGCGGTGTTGGTTAGAGAGGATTTGAAGCGGAGGAGGGTTTCGGCGGCGGTGGCTGCAGCGGAGGACGGCGGGTGGTTGAAGATGAGAAGGAAGAGGAGGCAGAGCCAAGGGAAGCCGGTTGGCGGTAACCTTTCCCACAAGGCAGAACTCTGCACCTTCCTTTCTCTTCAGTCCTCACTACCTAAAAGCTTCCCTCCATTTCCTCACAGATATCCCGACGCCGTCCTCTCCTTATTAATTCACTTTCCATTCTCAAATCTCTCCTCCATTTCCGCCATGGATTCCGGCGACGCAAACCTCCCTCTTCTTCTCCAACATTCATATTGCCGATCAAAATCCCTAACCTCCGACGAGCTTCGCAACTTCCGAATCAGCCTCAAATGGTACGCTCTCGACCACTCCTCCGCCGCTGGAAAGTTCGTCTCCTACTTCGCCTTCGTTATCCTCACCGTTGTTGTTCCCATCGTGACGATCGTCTCCGTCCGAGATCCAGCCGATGATCCGATCTCGCTTAACAAACTCGTTCAGGTTCCGGAATCCGGCCTGGCCGCCATCGGATTCTTCTCTCTGTGCCGATTCTTCCGCCGCTACGGCCTCCGGCAACTTCTGTTCCTCGATGGATTGCAAGAAGATTCGCTCTACGTTCAGCGAGGCTATGCGCGTGAACTCGACAAGGCGTTCCGTTACCTCGCGTACATTCTTTTCCCGTCGTTCTTCGTTGAGTTGGCCCACAAGATCATATTCTTCTCAACTGTTAAGATCTCGTTTCCTCAGTTCGTCGCGTTGCTATTGGCTTTGACCTCTAAAACTGATAAGAACTTCTTCAACTCGGGTGATATTGTGGTTTGCTCGACGGTTCAACTCTGCGGATTCTTCCTGTGCGTAGTCGGAGCGGCAAGAATTACTCACAGAGCTCAAGCAATCGCGTCGGTTGCAACCAGATGGCACATGCTCGTTACCTCCGCCGCGGCCGGATTCAACCACACAAAACCTCCGGCGCCGTCGCCGCCGACCGTCGACAACGACGGAGACGACACCGATTCCGACTCATCGTCGGAGGTTCTAATTTCATTAAGCACACAGGAGCCTTCTTCCTTCCAAACTAGACAAGCTTTAGTATCGTATTTGCAGCACAACAATGGCGGAATTACTCTGTTCGGATTCGCATTAGATCGCGGATTACTTCATACGCTCTTCGCTTTCGAATTCTCTCTAGTCATGTGGATTATGAATATCGATTCAATCATGGTTCTTTGGGTTTTCGGCTATGGATCTCTTGTGTGGAATCCAGGATTTGACTTCGACGAGAGAGTGATAGGTTTTATTAGAGATTATAGGCGTGTATTCGACCTCGCTTGTTTTGATCATAGAGGTACACCACAAAACCCTGCTAGAACTCTCACGCTTGAACCCAAAGAAGGATCCATTTGCTGGGGTGTTGCATATTGTATCCATGGAGGATCTGAACGAGAGAGAGCGGTTGTGGAGTCCCTGGAGAGAAGAGAGTGCGAGTATGACGGAAAGACCATTGTAGACTTTTACAAGGATAAAGACTCCATAGAACCAACATTGACAGGAGTTTTAGTTTTTACATCGACACTTGATAAATTGCTAAACAAATACTATCTAGGACCTGCTCCCTTGGAGGAAATGGCTAGCCAAATTGCAACTGCATCTGGTCCATGTGGGAACAACAGAGACTATCTATTCCGATTGGAGAATGCCTTGTTTGAAATCGGTCACGAAGACGATATGGTGATCGAGCTAGCGAACGAGGTGAGGAATATCCTTGGGAAGAAGGTTAGAAAGGGGAAGAAGAAGCAGCCGGTCAGACCGACAACTCACCTGCCTTTTTTGTCCTTCATCTCCGGTGTTCAGGTGCATCCGCTCGCCGACGCTGCGGTGGCGACGGATTCCTACGAAGAAAATGGAAAGATTGGTATGATGAAAGGTGAAAGCCATGGTAACTCAAGAGCTAAGAAAACAAGCAATCTGTTCTATTCTCCGGCAATCCCTCCTCTTTCGCGCTCGTTTCTGAATATTGATCTGGTTTCTTTGGATCATCTTCTCACAGCCATGGATCTTAACATGGATCTCAATGCTCCTCACTCCATGGGTACTACCATCATCGGCGTCACTTACAACGGCGGTGTTGTCCTTGGCGCCGATTCTCGTACCAGCACCGGTGTCTATGTGGCCAATCGTGCATCGGACAAGATTACGAAACTTACTGACAACGTCTATGTTTGTCGGTCTGGCTCGGCTGCAGATTCTCAAATTGTCTCTGATTATGTGCGCCATTTCCTTCATCAGCATACGATACAGCTTGGCCAGCCTGCGACTGTTAAAGTGGCTGCAAACCTTGTTAGGCTATTAGCATATAACAACAAGGATATGTTGCAAACTGGCCTTATTGTTGGTGGATGGGACAAGTATGAAGGTGGTCGAATCTATGGTATTCCTCTTGGTGGAACAATAATAGAGCAGCCATTTGCCATTGGAGGATCTGGTTCCAGTTACTTGTATGGATTTTTTGATCAAGCCTGGAAAGAAGGAATGACCAGAGACGAAGCTGAGCAATTGGTGGTTAAGGCCGTTTCTCTTGCCATTGCCCGAGACGGTGCCAGTGGTGGCGTTGTCCGTACTGTTACTATAAATTCCGAGGGAGTGACAAGAAAATTCTATCCTGGAGATCAGCTACCACTGTGGCATGAAGAATTAGAGCCTAAAAATTCATTGCTGGATGCTCTGAATGCGTCGAGTCCCGAGCCGATGAACATATAA 2838 48.98 MWRSPVQSGTEVFQLDNAAVLVREDLKRRRVSAAVAAAEDGGWLKMRRKRRQSQGKPVGGNLSHKAELCTFLSLQSSLPKSFPPFPHRYPDAVLSLLIHFPFSNLSSISAMDSGDANLPLLLQHSYCRSKSLTSDELRNFRISLKWYALDHSSAAGKFVSYFAFVILTVVVPIVTIVSVRDPADDPISLNKLVQVPESGLAAIGFFSLCRFFRRYGLRQLLFLDGLQEDSLYVQRGYARELDKAFRYLAYILFPSFFVELAHKIIFFSTVKISFPQFVALLLALTSKTDKNFFNSGDIVVCSTVQLCGFFLCVVGAARITHRAQAIASVATRWHMLVTSAAAGFNHTKPPAPSPPTVDNDGDDTDSDSSSEVLISLSTQEPSSFQTRQALVSYLQHNNGGITLFGFALDRGLLHTLFAFEFSLVMWIMNIDSIMVLWVFGYGSLVWNPGFDFDERVIGFIRDYRRVFDLACFDHRGTPQNPARTLTLEPKEGSICWGVAYCIHGGSERERAVVESLERRECEYDGKTIVDFYKDKDSIEPTLTGVLVFTSTLDKLLNKYYLGPAPLEEMASQIATASGPCGNNRDYLFRLENALFEIGHEDDMVIELANEVRNILGKKVRKGKKKQPVRPTTHLPFLSFISGVQVHPLADAAVATDSYEENGKIGMMKGESHGNSRAKKTSNLFYSPAIPPLSRSFLNIDLVSLDHLLTAMDLNMDLNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITKLTDNVYVCRSGSAADSQIVSDYVRHFLHQHTIQLGQPATVKVAANLVRLLAYNNKDMLQTGLIVGGWDKYEGGRIYGIPLGGTIIEQPFAIGGSGSSYLYGFFDQAWKEGMTRDEAEQLVVKAVSLAIARDGASGGVVRTVTINSEGVTRKFYPGDQLPLWHEELEPKNSLLDALNASSPEPMNI 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1499070 1512924 - CmoCh12G002270.1 Cmo12g00227 392915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00227 945 MobiDBLite consensus disorder prediction 344 369 - -
Cmo12g00227 945 Pfam Protein of unknown function (DUF3537) 135 275 IPR021924 -
Cmo12g00227 945 Pfam Protein of unknown function (DUF3537) 271 419 IPR021924 -
Cmo12g00227 945 PRINTS Proteasome component signature 864 875 IPR000243 GO:0004298|GO:0005839|GO:0051603
Cmo12g00227 945 PRINTS Proteasome component signature 889 900 IPR000243 GO:0004298|GO:0005839|GO:0051603
Cmo12g00227 945 PRINTS Proteasome component signature 853 864 IPR000243 GO:0004298|GO:0005839|GO:0051603
Cmo12g00227 945 PRINTS Proteasome component signature 732 747 IPR000243 GO:0004298|GO:0005839|GO:0051603
Cmo12g00227 945 CDD proteasome_beta_type_6 725 912 - -
Cmo12g00227 945 PANTHER RAS GUANINE NUCLEOTIDE EXCHANGE FACTOR K 271 429 IPR021924 -
Cmo12g00227 945 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 686 921 IPR029055 -
Cmo12g00227 945 CDD GGCT_like 438 524 IPR013024 -
Cmo12g00227 945 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 725 924 IPR029055 -
Cmo12g00227 945 PANTHER RAS GUANINE NUCLEOTIDE EXCHANGE FACTOR K 111 275 - -
Cmo12g00227 945 PANTHER RAS GUANINE NUCLEOTIDE EXCHANGE FACTOR K 271 429 - -
Cmo12g00227 945 Pfam ChaC-like protein 436 613 IPR006840 GO:0003839|GO:0006751
Cmo12g00227 945 ProSitePatterns Proteasome beta-type subunits signature. 728 775 IPR016050 GO:0005839|GO:0051603
Cmo12g00227 945 Gene3D - 434 602 - -
Cmo12g00227 945 ProSiteProfiles Proteasome beta-type subunit profile. 724 903 IPR023333 -
Cmo12g00227 945 PANTHER RAS GUANINE NUCLEOTIDE EXCHANGE FACTOR K 111 275 IPR021924 -
Cmo12g00227 945 Pfam Proteasome subunit 723 903 IPR001353 GO:0005839|GO:0051603
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00227 K02738 PSMB6; 20S proteasome subunit beta 1 [EC:3.4.25.1] - csv:101208696 449.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01653 Cmo-Chr11:11739516 Cmo12g00227 Cmo-Chr12:1499070 1.72E-19 dispersed
Cmo12g00051 Cmo-Chr12:272292 Cmo12g00227 Cmo-Chr12:1499070 1.93E-19 dispersed
Cmo12g00227 Cmo-Chr12:1499070 Cmo13g00437 Cmo-Chr13:5491558 4.92E-06 dispersed
Cmo18g00561 Cmo-Chr18:4502424 Cmo12g00227 Cmo-Chr12:1499070 5.07E-07 dispersed
Cmo18g00697 Cmo-Chr18:8835344 Cmo12g00227 Cmo-Chr12:1499070 1.43E-18 dispersed
Cmo04g02465 Cmo-Chr4:18221001 Cmo12g00227 Cmo-Chr12:1499070 1.66E-57 transposed
Cmo01g01635 Cmo-Chr1:12408928 Cmo12g00227 Cmo-Chr12:1499070 6.10E-86 wgd
Cmo12g00227 Cmo-Chr12:1499070 Cmo05g00642 Cmo-Chr5:3239680 0 wgd
Cmo12g00227 Cmo-Chr12:1499070 Cmo05g00450 Cmo-Chr5:2094315 3.17E-10 wgd
Cmo12g00227 Cmo-Chr12:1499070 Cmo09g00529 Cmo-Chr9:2491819 5.11E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g240 . . . . . . . . . Cmo12g00227 . . . . Sed08g1434 . . Bhi04g01115 Tan02g2596 Cmetu01g1445 . Hepe10g0330 . Lcy13g1369 . . . . . . . . . . Cone20ag0621 . . . Cme03g01712 . . Bda01g00957 . . . Bma01g01350 . . . . . Cma12g00273 . . . . . . . . . . . Cla08g01251 Cam08g1709 Cec08g1289 Cco08g1410 Clacu08g1406 . Cre08g1190 . Csa02g02304 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005086 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00227 Cmo_Chr12 FPKM 1.147705 0.0 0.470766 0.0 0.486487 0.0 0.0 6.412255 9.469481 9.799281