Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00230 ATGTGGACTCAGAAATATGCAAAGGAAAGGAAAGAGGTGGTGGTCGCCAGCAATCAATTGGTCGGAATCGCCATTGACAAGGATAAAGGAAGCCAAAATGCTCTCAAATGGGCTACTGAGAATCTCCTTCAAAAGGGCCAAACCGCCATTCTTATCCATGTCAAGCTCAGATCTTCGTCCCATTCAGATTTGATGTCCAACAATGGCAGTGGCAATGTTTTGGTAAGCAACGAAATCGACCCGAGCACGAGGGATTTGTTCCTTCCTTTTCGATGCTTCTGCACCCGAAAAGATATATTCTGCAAAGACATTGTTATTGAAGATGTAGATGTTGCAAAAGCATTGATTGAATATGTCACTCAAGCTGGAATCGACACTTTGATCGTCGGTACCACGACTAAAAGTGGCTTCTTGAGATTCAAAACGACAGATATTCCCGGCACAATTCTCAAAGGAGCACCAGATTTCTGCAATGTTTATGTCATATCAAGAGGGAAGATCCAAACTATGCGATCGGCCTCACGTCCCGCTCCAACTTCTTCGCCTCTACGAAACTTTTTGCTAAACCAATCTGGTATCAAATCGCAATCATCGGACTCGCAAACGCCTCAGATTCAAAGACCGGAAAAGCCTCCCATCGAACCAGCACGAAGATCACACGAAAACATCGAGTTCAGGTCTCCATTCACTAGGAAAGGTTACAATGGCAAAATGCCAGGGGAAATGAGTGTGCCAGATACTGATATTTCTTTTGTTGGCTCGGGAAGGCCGAGCGTCGACAAATTGTTCCCGACGTACTATGATGCCGTGGATCCAGGACGAATGCCCCCACGACTGTCGAATGGCACCGATGGTGATATATATCATAGCTTTGAATCGCAGCCGTTCGGACGCAAATCAATGGATGTAAACTTTCAAGAATTTTCATCGATCTTCTCGGAAGGCGAAAGATTATCGACTTCGTCACAGAGTATGGAAGAAGTAGAGGCTGAGATGAGGAGGCTGAAGCTGGAACTAAAGCAAACTATGGAAATGTATAGCACAGCCTGCAAGGAAGCACTTACAGCTAAGCAAAAGGCGATAGAGCTTCAACGATGGAAATCGGAGGAAGAACGGAGAATCGAGGAGGCTAGACTTGCTGAGGAAGCTGCATTAGCAATGGTCGAGCAGGAAAAGGCGAAGTCTCGATCGGCTATGGAGGCTGCTGAAGCATCTAAACGGATCGCGGAGTTGGAAGCACAAAAGAGAATTAACGCGGAAATTAAAGCATTCAAGGAAGCAGAAGAGAAAAAGAAGGCATTGGATGCATTGGCAAACAACGACGTCAGGTATCGGAGGTACACGATCGAGGAGATCGAAGCTGCTACCGAGTTCTTCTCGGAATCTTTGAAGATTGGAGAGGGAGGCTATGGACCTGTTTACAAGGGTTATTTGGATCACACACCTGTTGCCATTAAGGTCTTACGTCCAGATGCAGCTCAAGGAAGGTCACAGTTCCAACAAGAGGTCGAAGTACTAAGCTGCATCCGACATCCGAACATGGTTCTTCTCCTCGGAGCATGCCCCGAGTACGGCTGCTTGGTCTACGAGTTCATGGCAAATGGTAGCTTGGACGATTGCCTCTTTCGTCGTAAAGAAAAGTCGAAACCTCTTTCTTGGCAACTTAGATTCAAAATTGCAGCTGAAATCGGCACGAGCTTGTTGTTCCTCCACCAGACTAAGCCCGAGCCACTCGTGCACCGTGACTTGAAGCCAGCCAACATCTTGCTCGATTTTAACTACGTTAGCAAGATTAGCGATGTTGGTTTGGCTAGGCTTGTTCCCCCATCGGTAGCAGATAGTGTGACACAATATAGAATGACGTCAACTGCTGGCACGTTCTGCTATATCGATCCCGAGTATCAACAAACCGGTATGCTCGGTGTAAAGTCCGACATATATTCTTTAGGAATCATGTTTCTGCAGCTGATTACAGCAAAACCACCCATGGGATTGACTCACCATGTCGGAAGAGCCATTGAGAAAGGGGATTTGTCTGAAGTTCTTGATCCATCTGTTCTTGATTGGCCAGCTGAAGAAACCTTATGCTTTGCAGAGTTGGCTTTAAAATGTGCCGAGTTGAGAAGGAAAGATCGACCCGATCTTAGTAAGACCGTTCTTCCCGAGCTCATCCGATTACGATCGGTAGCCGAAGCGAGCTTGTATTCGTCGGACAAGGATGGCGTTTAG 2229 46.57 MWTQKYAKERKEVVVASNQLVGIAIDKDKGSQNALKWATENLLQKGQTAILIHVKLRSSSHSDLMSNNGSGNVLVSNEIDPSTRDLFLPFRCFCTRKDIFCKDIVIEDVDVAKALIEYVTQAGIDTLIVGTTTKSGFLRFKTTDIPGTILKGAPDFCNVYVISRGKIQTMRSASRPAPTSSPLRNFLLNQSGIKSQSSDSQTPQIQRPEKPPIEPARRSHENIEFRSPFTRKGYNGKMPGEMSVPDTDISFVGSGRPSVDKLFPTYYDAVDPGRMPPRLSNGTDGDIYHSFESQPFGRKSMDVNFQEFSSIFSEGERLSTSSQSMEEVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAIELQRWKSEEERRIEEARLAEEAALAMVEQEKAKSRSAMEAAEASKRIAELEAQKRINAEIKAFKEAEEKKKALDALANNDVRYRRYTIEEIEAATEFFSESLKIGEGGYGPVYKGYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLDDCLFRRKEKSKPLSWQLRFKIAAEIGTSLLFLHQTKPEPLVHRDLKPANILLDFNYVSKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITAKPPMGLTHHVGRAIEKGDLSEVLDPSVLDWPAEETLCFAELALKCAELRRKDRPDLSKTVLPELIRLRSVAEASLYSSDKDGV 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1521191 1526660 + CmoCh12G002300.1 Cmo12g00230 392918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00230 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 578 590 IPR008271 GO:0004672|GO:0006468
Cmo12g00230 742 Coils Coil 385 414 - -
Cmo12g00230 742 Gene3D Transferase(Phosphotransferase) domain 1 532 739 - -
Cmo12g00230 742 SMART serkin_6 459 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00230 742 CDD STK_N 20 165 - -
Cmo12g00230 742 MobiDBLite consensus disorder prediction 193 222 - -
Cmo12g00230 742 MobiDBLite consensus disorder prediction 193 207 - -
Cmo12g00230 742 Coils Coil 318 345 - -
Cmo12g00230 742 Pfam Protein kinase domain 461 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00230 742 ProSiteProfiles Protein kinase domain profile. 459 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00230 742 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34-LIKE 13 738 - -
Cmo12g00230 742 Gene3D Phosphorylase Kinase; domain 1 437 531 - -
Cmo12g00230 742 Gene3D HUPs 19 162 IPR014729 -
Cmo12g00230 742 Pfam Universal stress protein family 21 145 IPR006016 -
Cmo12g00230 742 PANTHER OS02G0152300 PROTEIN 13 738 - -
Cmo12g00230 742 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 23 163 - -
Cmo12g00230 742 SUPERFAMILY Protein kinase-like (PK-like) 442 717 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01716 Cmo-Chr11:12161082 Cmo12g00230 Cmo-Chr12:1521191 0 dispersed
Cmo12g00230 Cmo-Chr12:1521191 Cmo19g00725 Cmo-Chr19:7529137 0 dispersed
Cmo17g00684 Cmo-Chr17:7007215 Cmo12g00230 Cmo-Chr12:1521191 0 dispersed
Cmo01g01633 Cmo-Chr1:12395026 Cmo12g00230 Cmo-Chr12:1521191 0 wgd
Cmo12g00230 Cmo-Chr12:1521191 Cmo05g00647 Cmo-Chr5:3265098 0 wgd
Cmo12g00230 Cmo-Chr12:1521191 Cmo05g00439 Cmo-Chr5:2045072 0 wgd
Cmo12g00230 Cmo-Chr12:1521191 Cmo09g00527 Cmo-Chr9:2474861 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74715 PF00069 Pkinase 4.70E-38 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00230 - - csv:101214468 1169.07