Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00236 ATGCTAATACAATTTAACCCTTATAGTTCGGGTTGGGTTGACGTGCGTGGAACACTAGAACAACGCTCTCCACTCATCACTCAGATCTCTGCACCTCCCTCCAACTTTGATCTCTCTCGCTCTCGCAACCTTCCCGGCCAGCGTCGTCTCCGCCTGATCAGAGGGGAGACATCAGGTGGGTGTATCAATGGTGAATTTAATCAGCGCCGGCCCACTGCTTCCCGGGAATTAACAGATGCAGAGATTGCATCTCGGGTTGTAATTAGGGAAATTTTGAAGAGACCTCTAGCTCAATCCAAGAATCCGAAAATTGCCTTTATGTTTTTGACTCCAGGTCCACTACCCTTTGAGAAGCTCTGGCATAAATTTTTTGATGGTCATGACGGCAGATTTTCTATATATGTGCATGCGTCTAGAGAAAAAGTATCACATTCAAGCCCCCATTTTGTAGGTCGTGACATTCGCAGTGAAAAGGTAACCTGGGGAGAAATGTCTATGGTTGATGCAGAGAAGAGACTTTTGGCAAATGCACTTATAGACCCTGATAATCAGCACTTTGCTTTGTTCTCTGAAAGTTGTGTACCTCTTCACGAATTCGAGTATGTTTATAACTATTTGATATTTACAAATGTCAGCTATATTGATTGTTTTGATGATCCTGGTCCCCATGGAAGTGGTAGGTATTCAGAGCGCATGTTACCTGAAATTGAAAAGAAAGACTTTCGTAAAGGTTCTCAGTGGTTTTCCATGAAGCGACACCATGCTATTATTGTGATGGCTGACAGTCTTTACTATACAAAATTCAAGCTTTACTGTAAGCGAACTAAGGATGGCCCGAACTGCTATGCCGACGAACACTATTTTCCAACCTTTTTCAATATGATCGACCCTGGTGGAATTTCTAATTGGTCCGTAACACATGTAGATTGGACTGAGGGAAAGTGGCATCCAAAATCATATAGGAATCAAGATGTCACCTATGAGCTTCTGAAGAATATTGCTTCGTTAGATAAGGCCGCTCAAATTACGAGTACTGCACCGAAGAGGGTGATGTTCAAACCCTGCTTGTGGAATGGAGTGAAAAGACCATGCCATCTATTTGCTAGAAAATTTTATCCAGAAACTCTGGGAAGATTGTCCCACCTTTTCTCTAACTACACGGTGGTTGTTTAG 1173 42.8 MLIQFNPYSSGWVDVRGTLEQRSPLITQISAPPSNFDLSRSRNLPGQRRLRLIRGETSGGCINGEFNQRRPTASRELTDAEIASRVVIREILKRPLAQSKNPKIAFMFLTPGPLPFEKLWHKFFDGHDGRFSIYVHASREKVSHSSPHFVGRDIRSEKVTWGEMSMVDAEKRLLANALIDPDNQHFALFSESCVPLHEFEYVYNYLIFTNVSYIDCFDDPGPHGSGRYSERMLPEIEKKDFRKGSQWFSMKRHHAIIVMADSLYYTKFKLYCKRTKDGPNCYADEHYFPTFFNMIDPGGISNWSVTHVDWTEGKWHPKSYRNQDVTYELLKNIASLDKAAQITSTAPKRVMFKPCLWNGVKRPCHLFARKFYPETLGRLSHLFSNYTVVV 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1552256 1560034 + CmoCh12G002360.1 Cmo12g00236 392924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00236 390 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 66 389 IPR044174 GO:0016757
Cmo12g00236 390 Pfam Core-2/I-Branching enzyme 104 333 IPR003406 GO:0016020|GO:0016757
Cmo12g00236 390 PANTHER - 66 389 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00236 - - - csv:101204840 597.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00411 Cmo-Chr10:1858054 Cmo12g00236 Cmo-Chr12:1552256 1.36E-157 dispersed
Cmo11g00374 Cmo-Chr11:1874539 Cmo12g00236 Cmo-Chr12:1552256 1.36E-138 dispersed
Cmo12g00236 Cmo-Chr12:1552256 Cmo12g00909 Cmo-Chr12:8368927 1.16E-138 dispersed
Cmo12g00236 Cmo-Chr12:1552256 Cmo05g00746 Cmo-Chr5:3940439 1.17E-167 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g220 . . . Bda03g00462 . . . . . Cmo12g00236 . . . Car12g00269 . Cpe07g00246 . Bhi04g01067 . . . . . Lcy13g1332 . . . . . . . . . . . . . . Cme03g01813 . Blo18g00052 . Bda13g01364 . . . . . . . . Cma12g00284 . . . . . . . . . . . . . . . . . . . . Chy03g01182 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000821 3 8 2 2 3 2 4 2 2 2 2 2 4 3 3 4 2 5 5 2 3 3 2 2 3 2 2 6 4 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00236 Cmo_Chr12 FPKM 0.707079 0.342395 0.904906 1.279802 3.530866 2.884837 4.475634 0.179206 0.108099 0.103327