Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00247 ATGGCATCGGTAATTTCAGCATCTCGATTTACATTCTCCATTTCGAATTCCTTGAGGCTCTGTTGGAACGCTAGGGTTTGGCTACCTTCTTCAATTTGTCTCCGCTCTTGGAATTGGAATTCCATTTCGTTTAGCTCGGCTTCTATGAGTGAATCTGGTGAAAGTAATTCTGTTCTTCCACTGGACGACGGCGGAGCGAAGGCGGAGGAGGCCGCCGATGTTTTGGTTCAGTACGTGGTGCTACGGAGAGATCTGATCGATTCGTGGCCGCTCGGAAGTGTTGTGACTCAGGGATGCCATGCTTCAGTCTCCGCCATTTGGTTGAATAAAGACGATCCTCACACTTCGGAGTACTGTAGTCCCCAAAATATCGATTCTATGCACAAGGTTACTCTCGAGGTGAAGGGAGAAACCCAGATCGTTAACTTATCAGAGAAACTTAAAGCAAATTCAATCGTCCATAAACTGTGGGTAGAACAGCCAGAGAACATTCCAACATGTCTTGCCTCAAAGCCCTACCCCAAATCAGTTGTATCACCATTTTTTAAAAAGCTGAAACTCTAA 564 45.74 MASVISASRFTFSISNSLRLCWNARVWLPSSICLRSWNWNSISFSSASMSESGESNSVLPLDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKDDPHTSEYCSPQNIDSMHKVTLEVKGETQIVNLSEKLKANSIVHKLWVEQPENIPTCLASKPYPKSVVSPFFKKLKL 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1615065 1617165 - CmoCh12G002470.1 Cmo12g00247 392935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00247 187 Pfam Peptidyl-tRNA hydrolase PTH2 75 187 IPR002833 GO:0004045
Cmo12g00247 187 PANTHER PEPTIDYL-TRNA HYDROLASE PTRHD1-RELATED 57 187 IPR042237 -
Cmo12g00247 187 CDD PTH2_like 75 187 - -
Cmo12g00247 187 Gene3D Bit1 75 187 IPR023476 -
Cmo12g00247 187 SUPERFAMILY Peptidyl-tRNA hydrolase II 75 187 IPR023476 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00247 K05969 PTRHD1; peptidyl-tRNA hydrolase PTRHD1 [EC:3.1.1.29] - csv:101206751 273.478
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00247 Cmo-Chr12:1615065 Cmo05g00652 Cmo-Chr5:3291479 2.10E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g195 . . . . . . . . . Cmo12g00247 . Cma05g00625 . Car12g00279 Sed01g1300 Cpe07g00254 . Bhi04g01087 Tan02g2614 Cmetu03g1754 . Hepe10g0321 . Lcy13g1353 . . . . . . . . . Cone17ag1080 Cone20ag0632 . . . . . . . Bda13g01300 . . . Bma02g00058 . . . . Cma12g00296 . . . . . . . . . . . . . . . . . . . . Chy03g01195 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007204 1 1 1 1 1 0 2 0 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 4 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00247 Cmo_Chr12 FPKM 3.189084 1.809648 2.453411 2.183082 1.464398 1.115422 1.202519 0.859463 0.668016 1.069442