Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00252 ATGGCCTCGCAAAACCGCCCTTCCCGATCCCTCGAAAACCCGCCGGAAACCGGTAATCCGATGTCGATCGCCAGTTTTCCGGGCAGAGTAATGGAAAAGCTGAAAACCAATCTGGTATTCCGGTCAAAATTGGCAGAATTGAACGGCGCAATGGGCGATTTGGGGACATATATTCCCATAGTCTTATCCTTGACACTCTCCAAGGATCTCAATTTAGGCACCACGTTGATTTTCACCGGAATCTACAACATCATCACCGGCCTAATATACGGCGTTCCGATGCCGGTCCAGCCAATGAAATCAATCGCCGCCGCCGCCCTGGCCGATCCTGAATTCGACGTGGCAGAGATCATGGCGGCCGGAATCTTGACCGGCGGGATTCTGTTTTTTCTGGGTGCGATAGGGCTGATGCAATTGGTTTATAAATTCATTCCGTTGCCGGTCGTGAGAGGAATTCAATTGGCTCAAGGCTTGTCTTTTGCTCTCACGGCTGTTAAATATGTCCGTTATGATCAAAATATGGCGAAATCCAAATCTCTTGACGGTCGTGGGTGGCTTGGATTTGACGGATTGATTCCGGCCATTGTTTGTGCTTGTTTTGTAATCGTCGTCAACGGCGCCGGAGAAGAAGAGCACCGTGAAGAACCACCGGCGGAGGGAAGTAAACGAGAGAAGGTGAGGAAGATCATAACAAAACTTCCATCGGCGTTCATAATTTTCTTGATCGGCGCCGCTTCTCTGTTCATTCGAACGCCGGAAGTGGTGAACGGCGTTAGATTTGGGCCGTCGCCGATGAGTGTCATCAAGATTACAAAGAGCCAATGGAAAAAGGGGTTTATAAAGGGTACAATTCCTCAGCTTCCTCTGTCCATTTTAAACTCTGTTATCGCCGTTTGTAAGCTCTCCATGGACCTTTTTCCCGGGAGGGTTTTCACCGTCACGTCGCTGTCGATGACGGTGGGGCTTATGAACATCATCGGTTGTTGGTTCGGCGGCGTTCCGACCTGCCACGGTGCTGGTGGGCTCGCTGGCCAGTACAAGTTCGGCGGCAGGAGCGGCGCGTGCGTTGCCTTTCTCGGCGCCGCAAAGTTGCTGCTTGGCTTGGTTCTCGGAAGCTCTATTGCAAAGGTCTTAAACCAATTTCCAGTAGCGATTTTGGGGGTTCTACTACTATTTGCTGGAGTGGAGTTGGCGATGGCAGCAAGAGACATGAACAGTAAAGAGCAGGCGTTTGTGAATTTCTCTTTGAGGCTTGAGAGATTCGTATCTCGCGTCTGTGGAGAGTTTGAGCTTACCGAGTTGAAGATGGCTGTCAAAACAGCGCAATCATTTAGAGATCGGACGCATGAATTCCAGAACATAGCAGAAAGGCTAAAGAAGTCTTTCTCATCTGGCACTGGAACAACAGGACCAAGTGTTGGTTTAAAATCAGAAGAGCAGCGTTCTGCTGTGGCTCTGCAGTCAGAATTTAATAAGAGGGCTTCCAAGATTGGGTTAGGGATACACCAGACGTCCCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCACTTATTAAGCAGGACATTACAACATTGAACTCTGCAGTTGTAGATCTTCAGCTTCACTGCAACTCTAGAAATGAAAATGGAAACATGTCCAGCGATACTACTAGTCATTCAACCACTGTGGTGGATGATCTTAAGAATCGCCTTATGAGCACAACTAAAGAATTTAAAGAAGTTCTAACTATGCGAACAGAAAATTTGAAGGTTCATGAGAATAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTATGCGCCAACGCCCTTTAGCTTCCAGGTCCACTGCTGGTGCCTCAAGCGCACCCCCTCCTCCGTGGGCCAAGCCGCCTACATCTTTTTCCAAAACATCTCCCGGGAAGCAGGTAGATGGGGAGAGTCAACCATTGTTACAGCAGCAACAGCAACAGCAACAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATGTAGAATCCACTATTCATGAATTGAGCAATATCTTCAACCAGCTGGCGACTCTGGTTTCTGAACAAGGAGAGATTGCAATCAGGATTGATGAGAATATGGATGATTCTCTGGCAAACGTGGAGGGGGCACAGGGAGCTTTGCTCAAGTATCTAAACAACATATCTTCAAATAGTATAATGTTGATAATGTGTCAGTTTGTGAATTGTAAGAGGAGTCGAAAACATCGTGGCGATTGCCATAGCAATCGGTTCATGTCGAGAAGGAATGCGTCTATGCCTTCTCCGTCATCTAATTTGGAGAATGCATCGCTCAACAACTCATCTTACAACAGATCGAAGATTAGCCATTATAGATCTCGTCCTCTTATTCATGGGAGGATTTTAACAAGGACGACAAATAGTTTAAATGGAAGTGTTTGGATAATCAAGTTGGAAGTAGAAGAAAGGACCAATGTAGAAGCTAAACAAGTCGCACCGTCCTCACCGTCCTCGCCGTCCTCTCTTTCGCCGGCGGCTTCTTCTTTTCCGCTTGTCCGAACCACCGCCCGCAATCCTTCCGCCATCCAAACCCTCAAACCCTGGGTTTCACTATCTTCACGGTTCGGTTCAGTTTCCGTTTCACCTTCAATTCCTTTCTAA 2724 47.06 MASQNRPSRSLENPPETGNPMSIASFPGRVMEKLKTNLVFRSKLAELNGAMGDLGTYIPIVLSLTLSKDLNLGTTLIFTGIYNIITGLIYGVPMPVQPMKSIAAAALADPEFDVAEIMAAGILTGGILFFLGAIGLMQLVYKFIPLPVVRGIQLAQGLSFALTAVKYVRYDQNMAKSKSLDGRGWLGFDGLIPAIVCACFVIVVNGAGEEEHREEPPAEGSKREKVRKIITKLPSAFIIFLIGAASLFIRTPEVVNGVRFGPSPMSVIKITKSQWKKGFIKGTIPQLPLSILNSVIAVCKLSMDLFPGRVFTVTSLSMTVGLMNIIGCWFGGVPTCHGAGGLAGQYKFGGRSGACVAFLGAAKLLLGLVLGSSIAKVLNQFPVAILGVLLLFAGVELAMAARDMNSKEQAFVNFSLRLERFVSRVCGEFELTELKMAVKTAQSFRDRTHEFQNIAERLKKSFSSGTGTTGPSVGLKSEEQRSAVALQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLHCNSRNENGNMSSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFMRQRPLASRSTAGASSAPPPPWAKPPTSFSKTSPGKQVDGESQPLLQQQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRIDENMDDSLANVEGAQGALLKYLNNISSNSIMLIMCQFVNCKRSRKHRGDCHSNRFMSRRNASMPSPSSNLENASLNNSSYNRSKISHYRSRPLIHGRILTRTTNSLNGSVWIIKLEVEERTNVEAKQVAPSSPSSPSSLSPAASSFPLVRTTARNPSAIQTLKPWVSLSSRFGSVSVSPSIPF 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1636967 1646578 + CmoCh12G002520.1 Cmo12g00252 392940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00252 907 MobiDBLite consensus disorder prediction 1 20 - -
Cmo12g00252 907 Gene3D - 485 738 - -
Cmo12g00252 907 MobiDBLite consensus disorder prediction 772 800 - -
Cmo12g00252 907 MobiDBLite consensus disorder prediction 603 680 - -
Cmo12g00252 907 MobiDBLite consensus disorder prediction 779 800 - -
Cmo12g00252 907 PANTHER - 28 414 IPR031563 GO:0015098|GO:0015689
Cmo12g00252 907 MobiDBLite consensus disorder prediction 1 23 - -
Cmo12g00252 907 CDD SNARE_syntaxin5 686 752 - -
Cmo12g00252 907 PANTHER MOLYBDATE TRANSPORTER 1/2-RELATED 28 414 - -
Cmo12g00252 907 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 441 460 IPR021538 -
Cmo12g00252 907 SUPERFAMILY t-snare proteins 487 738 IPR010989 GO:0016020|GO:0016192
Cmo12g00252 907 MobiDBLite consensus disorder prediction 605 636 - -
Cmo12g00252 907 MobiDBLite consensus disorder prediction 649 680 - -
Cmo12g00252 907 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 683 745 IPR000727 -
Cmo12g00252 907 Pfam Molybdate transporter of MFS superfamily 45 160 IPR031563 GO:0015098|GO:0015689
Cmo12g00252 907 Pfam Molybdate transporter of MFS superfamily 279 397 IPR031563 GO:0015098|GO:0015689
Cmo12g00252 907 ProSitePatterns Syntaxin / epimorphin family signature. 689 728 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cmo12g00252 907 SMART tSNARE_6 678 745 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00161 Cmo-Chr4:833822 Cmo12g00252 Cmo-Chr12:1636967 2.98E-72 dispersed
Cmo04g01191 Cmo-Chr4:6096388 Cmo12g00252 Cmo-Chr12:1636967 6.34E-82 dispersed
Cmo17g00805 Cmo-Chr17:7691886 Cmo12g00252 Cmo-Chr12:1636967 1.06E-146 transposed
Cmo12g00252 Cmo-Chr12:1636967 Cmo05g00672 Cmo-Chr5:3406264 8.48E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00252 - - csv:101212057 624.009