Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00254 ATGGATGTTCCCTCGGTGGAACTAAATTGTGAAAGCGAAGAAGACTCTTACCCTTTATTAATGGCCCAGCCAGAAAATATCAGCAGCAGTGAGCATATCATTAACATAACTGGTACTGGTGATTCTGCTCCCTCTAGTTTGCCCCATGGTAGGAATTCAAATGGCTTAAATTCATCACAGCCTGAAGATAGACCTTCAAGTAGTGCACGAGTTCCTTCGTCTCAACCTTCAATTTCTACTACTGGATCAAATTCTAGAAATTCTTCATTCATAAGAAGAGGAGATTCGCGACGTCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATAGTATTATCATTGTCAAAGAATGAAAAACCTCGTGCACCTTTGTTTGCATGGATTGTGGGATATGCATCTGGGTGTGGTGCGACAGTTCCTCTTCTCTATTGGCGTTATCGACACCGTAATCAGGCTTCAGAACAAGATTCTCTTCAACCTAGTCAGAATTCTAATCGCATTAATGTTCCTGCTGGGCCATTCTCTGTTTCAGTTTCTAGGGCATCAGAAGGCGAAGAACTTCATCATCCTGCCCCATCCCCCAGAGGCAGTGTAGGGTCAGGATTACTGACAGCAAGGGTAAAAGTTTTGGTTGAATATTTCAAGATGGGTCTGGATTGCTTCTTTGCTATTTGGTTTGTAGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGCCTCTGAGGCTCCTAATTTGTACAGGCTATGTATAGTGTTTCTTACCTTTAGCTGTATTGGTTATGCCATGCCCTTCATTCTATGTGTAACCATCTGCTGCTGCCTACCTTGTATAATTTCCATCCTTGGCTTTAGAGAGGACATGACACAGACCCGAGGAGCCACAACAGAATCTATTAATGCATTGCCAACTTATAAGTTTAAGCTGAAGAAAAGTAGAAGTGGAGATGATAGAGAAAACAACTCCGGGGCCGGTGAAGGAGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGTGATTTCAGGAGAAGATGCTGTCTGTTGCATCTGCTTGGCGAAATATGCCAACAATGATGAACTGAGAGAGTTGCCATGTTCTCACTTTTTCCACAAGGAATGTGTAGATAAATGGTTGAAGATCAACGCCCTGTGCCCGCTTTGCAAAAACGAGGTCGGTGAGAGTATCGTTGGCTCTCTTGAGGGGACAAATAGACAACAACAGGGTGATTAG 1281 43.25 MDVPSVELNCESEEDSYPLLMAQPENISSSEHIINITGTGDSAPSSLPHGRNSNGLNSSQPEDRPSSSARVPSSQPSISTTGSNSRNSSFIRRGDSRRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATVPLLYWRYRHRNQASEQDSLQPSQNSNRINVPAGPFSVSVSRASEGEELHHPAPSPRGSVGSGLLTARVKVLVEYFKMGLDCFFAIWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDMTQTRGATTESINALPTYKFKLKKSRSGDDRENNSGAGEGGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNEVGESIVGSLEGTNRQQQGD 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1650074 1655008 - CmoCh12G002540.1 Cmo12g00254 392942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00254 426 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 423 - -
Cmo12g00254 426 SMART ringv_2 363 405 IPR011016 GO:0008270
Cmo12g00254 426 MobiDBLite consensus disorder prediction 1 101 - -
Cmo12g00254 426 ProSiteProfiles Zinc finger RING-type profile. 364 405 IPR001841 -
Cmo12g00254 426 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 423 - -
Cmo12g00254 426 MobiDBLite consensus disorder prediction 325 345 - -
Cmo12g00254 426 CDD RING-H2_RNF111_like 363 405 - -
Cmo12g00254 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 412 IPR013083 -
Cmo12g00254 426 SUPERFAMILY RING/U-box 356 410 - -
Cmo12g00254 426 SMART ring_2 364 404 IPR001841 -
Cmo12g00254 426 Pfam Ring finger domain 364 405 IPR001841 -
Cmo12g00254 426 MobiDBLite consensus disorder prediction 22 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01027 Cmo-Chr9:5491616 Cmo12g00254 Cmo-Chr12:1650074 2.36E-52 dispersed
Cmo09g01028 Cmo-Chr9:5496998 Cmo12g00254 Cmo-Chr12:1650074 5.99E-55 dispersed
Cmo12g00254 Cmo-Chr12:1650074 Cmo14g02075 Cmo-Chr14:15111582 8.68E-51 dispersed
Cmo12g00254 Cmo-Chr12:1650074 Cmo05g00674 Cmo-Chr5:3421231 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00254 - - cmax:111496220 811.216