Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00256 ATGATGAAAGAACTTAAGTTTGCCGTCAGAATCACACGCTCCCAGTCTAATTCCTTGAGTAGACTGGAAGCTACTTCACCCTCGTTACAAGTTTCACTCAGAAAACTGCGCAAACGCGATCATGCCGAAAACTCTGAACGAGCACAACTGGATGGAAGTAATGCTCCTACAACTATCACTATTGGCCTTCGGCGCAAAAGAAGAGCAGTGCTCAAGGATGTTACTAACATGTCCAGTGAGAGCAATAATCTGGGTTGCTTGCATGCTTCTAAAATTCAGGTACATGAGGTCATACAGATCGAATCACTTGAAGATTCACCCATTAAAAGGACGGCTGAATCACAAGTTACCTTCCCAATGATGAGGCCAGACAAAAAAGAGACAGCACAGAAGAACAAGTTTCAGACTGTCATAGGATGCACAAATGTTGCGTTTCCCAAGTCTTCGGGATTAAAAGACTGCCAAATGAAAGATGAGGCTCGAGTTTGTGATAAACTAAACCATCTCGGTACATCGGATGCTGTTTCAATCTCAGAAGATCCTCAAGCATGCACACTATATGCCCATAACATATATGATATCAATCGTGTAATAGAGCTTGATCAAAGGCCTTCTACTAATTATATGGAGAAGTTACAGAAATATATCACTCCAATCATGCGAGGGATTCTAATTGATTGGTTAGTTGAGGTTTCTGAAGAATATAAACTCGTTTCTGACACACTTTACCTCACCGTGAATCTCATCGATCGATTTCTCTCTCAAAGTTGCATTGAAAGGCATAGATTACAACTCCTTGGCGTCAGTTGCATGTTAATCGCCTCTAAATATGAAGAAGTATGTGCACCATTTGTGGAAGAGTTTTGCTGCATCACGGACAACACCTATACGAGAGGAGAGGTACTAAAAATGGAGGGTGAAGTACTGAACTTGCTCAACTTTCAGCTCTCTGTTCCCACTACAAAAACATTTCTCAGGAGATTTGTGCAGGTAGCACCGGCTTCTTGCAAGGAACCTCGCGACAGGTTCGAGCATTTGACGAATTATCTAGCAGAATTGACTCTTGGCGAGTACAGCTTTCTGAGGTTTCTGCCATCAGCAGTGGCAGCATCTGTGGTGTTCTTAGCCAAATGGATTCTGAATCAACCAAATAACCCATGGAATCCAAGTCTAGAACAGTATACAAATTACAGTATCTCCCAGCTAAAAGCTCCAGTTCTTGCCTTAGAACATCTAAGATTGAACTCGTCAACTTGCCCTTTCAACGCCATCTTTCACAAGTACAGACAACACAAGTTTGGAAGCGTGGCGACTTTAACCCCCACAATACCAGTTCTCTCAGCTTTCCAAAACCAGACAGACACCTAA 1368 42.47 MMKELKFAVRITRSQSNSLSRLEATSPSLQVSLRKLRKRDHAENSERAQLDGSNAPTTITIGLRRKRRAVLKDVTNMSSESNNLGCLHASKIQVHEVIQIESLEDSPIKRTAESQVTFPMMRPDKKETAQKNKFQTVIGCTNVAFPKSSGLKDCQMKDEARVCDKLNHLGTSDAVSISEDPQACTLYAHNIYDINRVIELDQRPSTNYMEKLQKYITPIMRGILIDWLVEVSEEYKLVSDTLYLTVNLIDRFLSQSCIERHRLQLLGVSCMLIASKYEEVCAPFVEEFCCITDNTYTRGEVLKMEGEVLNLLNFQLSVPTTKTFLRRFVQVAPASCKEPRDRFEHLTNYLAELTLGEYSFLRFLPSAVAASVVFLAKWILNQPNNPWNPSLEQYTNYSISQLKAPVLALEHLRLNSSTCPFNAIFHKYRQHKFGSVATLTPTIPVLSAFQNQTDT 455
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 1659706 1666053 - CmoCh12G002560.1 Cmo12g00256 392944
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00256 455 ProSitePatterns Cyclins signature. 221 252 IPR006671 -
Cmo12g00256 455 Pfam Cyclin, N-terminal domain 191 317 IPR006671 -
Cmo12g00256 455 CDD CYCLIN 220 309 IPR013763 -
Cmo12g00256 455 Pfam Cyclin, C-terminal domain 319 441 IPR004367 -
Cmo12g00256 455 Gene3D - 191 438 - -
Cmo12g00256 455 SMART Cyclin_C_2 319 442 IPR004367 -
Cmo12g00256 455 CDD CYCLIN 317 398 IPR013763 -
Cmo12g00256 455 SUPERFAMILY Cyclin-like 179 316 IPR036915 -
Cmo12g00256 455 SMART cyclin_7 323 411 IPR013763 -
Cmo12g00256 455 SMART cyclin_7 226 310 IPR013763 -
Cmo12g00256 455 PIRSF Cyclin_A_B_D_E 6 453 IPR039361 -
Cmo12g00256 455 PANTHER CYCLINS 46 439 IPR039361 -
Cmo12g00256 455 PANTHER CYCLIN-A2-4 46 439 - -
Cmo12g00256 455 SUPERFAMILY Cyclin-like 318 441 IPR036915 -
Cmo12g00256 455 Gene3D - 204 317 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00256 Cmo-Chr12:1659706 Cmo15g00668 Cmo-Chr15:3266992 1.21E-92 dispersed
Cmo01g01578 Cmo-Chr1:12108486 Cmo12g00256 Cmo-Chr12:1659706 9.42E-121 wgd
Cmo12g00256 Cmo-Chr12:1659706 Cmo17g00798 Cmo-Chr17:7649458 3.08E-111 wgd
Cmo12g00256 Cmo-Chr12:1659706 Cmo09g00483 Cmo-Chr9:2184891 3.56E-137 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00256 K06627 - csv:101211578 706.057