Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g00266 | ATGTCGACCGCCGCCGTGATCGCACATTCTAGCTCCTGGTCTCGCGCTCTCATCAATATCTCTCCCTACACTTTCTCCGCCGTCGGTATCGCCATCGCCATCGGCGTTTCCGTCCTCGGCGCCGCCTGGGGGATTTACATTACGGGAAGCAGTTTGATTGGTGCCGCGATTAAAGCTCCTCGTATTACTTCGAAGAATTTGATCAGTGTAATTTTCTGTGAAGCTGTTGCTATATACGGTGTCATTGTTGCCATCATCTTACAAACCAAGTTAGAGAGTGTTTCAGCGTCTCAGATTTATGCCCCCGAGTCTCTAAGAGCAGGATATGCAATTTTTGCATCTGGAATCATAGTTGGCTTTGCTAACCTTGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCGTTATCAGATGCCCAAAACTCCTCTCTTTTTGTGAAAATTCTTGTAATTGAGATCTTTGGCAGTGCGCTCGGGTTGTTCGGAGTGATTGTTGGGATAATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGACAGGTTGA | 549 | 48.09 | MSTAAVIAHSSSWSRALINISPYTFSAVGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKTG | 182 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 1716019 | 1717687 | + | CmoCh12G002660.1 | Cmo12g00266 | 392954 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g00266 | 182 | Gene3D | - | 23 | 177 | IPR035921 | - | |
Cmo12g00266 | 182 | SUPERFAMILY | F1F0 ATP synthase subunit C | 21 | 90 | IPR035921 | - | |
Cmo12g00266 | 182 | CDD | ATP-synt_Vo_c_ATP6F_rpt1 | 25 | 87 | - | - | |
Cmo12g00266 | 182 | PANTHER | V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT | 4 | 179 | - | - | |
Cmo12g00266 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 41 | 65 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Cmo12g00266 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 67 | 91 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Cmo12g00266 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 123 | 149 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Cmo12g00266 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 150 | 173 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Cmo12g00266 | 182 | CDD | ATP-synt_Vo_c_ATP6F_rpt2 | 107 | 171 | - | - | |
Cmo12g00266 | 182 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 4 | 179 | - | - | |
Cmo12g00266 | 182 | SUPERFAMILY | F1F0 ATP synthase subunit C | 104 | 172 | IPR035921 | - | |
Cmo12g00266 | 182 | Pfam | ATP synthase subunit C | 112 | 171 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 | |
Cmo12g00266 | 182 | Pfam | ATP synthase subunit C | 29 | 87 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo12g00266 | Cmo-Chr12:1716019 | Cmo12g00375 | Cmo-Chr12:2323767 | 1.46E-21 | dispersed | |
Cmo01g01544 | Cmo-Chr1:11905961 | Cmo12g00266 | Cmo-Chr12:1716019 | 8.14E-109 | wgd | |
Cmo12g00266 | Cmo-Chr12:1716019 | Cmo05g00421 | Cmo-Chr5:1939914 | 4.00E-120 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g00266 | K03661 | - | csv:101221052 | 328.561 |