Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00272 ATGGGGGCTCCATTCGAGGGAATAGTAAAAGATTTCAAGGGGAGGGCAGCCTGCTATAAGCAGGACTGGATATGTGCACTATGTTCGGGCGTCAGGATTTTAGCTCCTACTATGTACATATTCTTCGCCTCTGCCATTCCTGTCATTGCCTTCGGGGAGCAATTTAGTAGGGATACAGGTGGAAGACTGAGCACAGTGGAATCATTAGCCTCAACTGCAATTTGTGGAATTATCCACTCAATATTTGGGGGACAGCCTTTGCTGATTTTAGGAGTGGCAGAACCAACAGTTATAATGTACACTTACTTGTACAGTTTCAGCAAAGGCCGGCCGGAGTTAGGAGCTGAGCTCTTTTTAGCCTGGGCTGGATGGGTTTGCATTTGGTCGGGATTCTTCTTGATTCTCCTTGCAATCTTTAATGCTTGCGACATTATCACCAAATTTACAAGAGTTGCGGGGGAACTGTTTGGCATGCTTATTGCTGTTCTTTTCTTCCAAGAGGCAATAAAGGGATTGATCAGCGAGTTCAATGCTCCCAAATCAGAAAATCCAGAGCCATTGGACTTAAAATTTGAATGGTTGTATGCAAATGGGTTGCTTGCCATCATTTTTGCCAACGGGGTACTCTTTTCAGCCCTGAAAAGCAGACATGCGAGGTCGTGGAAATATGGCACTGGCTGGTTTCGCAGTTTCATTGCAGACTATGGGGTTCCACTTGTGATCGTGTTATGGACAGCATTATCTTATGGAGTCCCCAGCAAAGCTCCAGATGGAGTTCCGAGGAGACTCTTTTGTCCATTACCTTGGGAGCCGGCTTCAATGTACCATTGGACTGTAGCCAAGGACATGGGGAAGGTTCCAATGATTTACATCCTTGCTGCTGCTCTGCCAGCCATGATGATAGCAGGCCTTTACTTTTTTGACCATAGTGTTGCATCACAAATGGCGCAGCAGAAAGAGTTTAATCTTCAAAAACCATCTGCATATCATTATGATGTCTTCTTGCTCGGGATTATGACTTTGATTTGTGGATTGCTGGGACTACCTCCTTCTAATGGTGTCCTCCCACAGTCCCCAATGCACACCAAGAGTCTCGCAGTGCTTAAACGGCAGATAATACGAAAAAAAATGGTAAAGAGTGCACAGGAATGTATCAAACTAAAAGCAAGCAACTCTGAAGTTTATGGAAAGATGCAGGCGGCGTTCACTGAAATAGACGCATCTCCAACTCCTAAAGAGCTTGAGACCTTGACGAAGGCAGTAATGAGTGCTGATGACAGTGATCACAAGGGAAAATTCGACGCCGAGAAAAATATAGATCCTTATTTGCCTGTTTGTGTGAACGAACAAAGGATGAGCAACTTGCTGCAGTCCTTCCTTGTGGCCGCATCAATATTTGCTGTCCCTATAATGAGAATGATACCCACTTCAGTTCTTTGGGGATACTTTGCTTACATGGCCATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGTTGTTGTTACTGTTTATCACACCGAGTCGGCGTTTCAAGGTCTTGGAGGGGTCTCATTTATCATTCGTTGAAACCGTGCCATTCAAAATCATTGTGTCGTTTACTCTCCTTCAGTTAGCATATTTCTTGTTGTGCTTTGGGATAACGTGGATACCTGTAGCTGGGATCCTGTTCCCACTGCCATTTTTCCTCCTCATTAGCATCAGAGAGCATGTGCTCCCCAAATTCTTCCAGCATAACCATCTTCAAGAGCTAGATGCCTCAGAGTATGAGGAGATTGCCGGTGCTCCACATCGGAACCTCACAGATAAGGAGATACGACCCGATTCAATTGCGGGCGAGAGTAACGAAGAATACTATGACGCCGAGATCTTAGATGAGATGACAACTCATAGAGGAGAACTAAAGCTTAGAACTGTAAGTTACAACGAAGAAAAGTTCTTTCAGGTTCATCCTGAAAGTTCAACTCGAACACAATGA 1977 44.82 MGAPFEGIVKDFKGRAACYKQDWICALCSGVRILAPTMYIFFASAIPVIAFGEQFSRDTGGRLSTVESLASTAICGIIHSIFGGQPLLILGVAEPTVIMYTYLYSFSKGRPELGAELFLAWAGWVCIWSGFFLILLAIFNACDIITKFTRVAGELFGMLIAVLFFQEAIKGLISEFNAPKSENPEPLDLKFEWLYANGLLAIIFANGVLFSALKSRHARSWKYGTGWFRSFIADYGVPLVIVLWTALSYGVPSKAPDGVPRRLFCPLPWEPASMYHWTVAKDMGKVPMIYILAAALPAMMIAGLYFFDHSVASQMAQQKEFNLQKPSAYHYDVFLLGIMTLICGLLGLPPSNGVLPQSPMHTKSLAVLKRQIIRKKMVKSAQECIKLKASNSEVYGKMQAAFTEIDASPTPKELETLTKAVMSADDSDHKGKFDAEKNIDPYLPVCVNEQRMSNLLQSFLVAASIFAVPIMRMIPTSVLWGYFAYMAIDSLPGNQFWERLLLLFITPSRRFKVLEGSHLSFVETVPFKIIVSFTLLQLAYFLLCFGITWIPVAGILFPLPFFLLISIREHVLPKFFQHNHLQELDASEYEEIAGAPHRNLTDKEIRPDSIAGESNEEYYDAEILDEMTTHRGELKLRTVSYNEEKFFQVHPESSTRTQ 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1739477 1743383 + CmoCh12G002720.1 Cmo12g00272 392960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00272 658 PANTHER ANION EXCHANGE PROTEIN 3 654 IPR003020 GO:0005452|GO:0006820|GO:0016020
Cmo12g00272 658 Pfam HCO3- transporter family 4 178 IPR011531 GO:0006820|GO:0016021
Cmo12g00272 658 Pfam HCO3- transporter family 447 535 IPR011531 GO:0006820|GO:0016021
Cmo12g00272 658 Pfam HCO3- transporter family 198 371 IPR011531 GO:0006820|GO:0016021
Cmo12g00272 658 Gene3D Helical hairpin bin 15 56 - -
Cmo12g00272 658 PANTHER BORON TRANSPORTER 6-RELATED 3 654 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00417 Cmo12g00272 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00272 Cmo-Chr12:1739477 Cmo14g01361 Cmo-Chr14:11281181 0 dispersed
Cmo12g00272 Cmo-Chr12:1739477 Cmo05g00417 Cmo-Chr5:1919077 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00272 K24194 - csv:101220188 1153.66