Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00273 ATGCAGACCGCCGCCGTCATCTTCTTCTCGGTGCTTCTCTCCGCCGCTGCCTTCCATCCCGCTCTCGCCCTCGTCGACGGGTATTTGCCGAATGGCGATTTTGAGAGGGGACCAAAGGCGTCGGAAATGAACGGCACGGTGGTGAAAGGGCAGTTTGCGATACCGGCGTGGGAAATTTCAGGGTTCGTTGAGTACATAAAATCCGGTCAGAAACAAGGCGACATGTTGCTGGTGGTGCCGGAGGGGGCGTTCGCCGTCCGGCTAGGGAACGAGGCGTCGATCAAACAGAAGATCAAAGTGGTTAAAGGAGTTTACTATTCCATAACGTTCAGCGCCGCCCGTACCTGCGCTCAAGAGGAGCGGCTGAACATCTCCGTCGCGCCGGACTGGGGGGTTCTGCCGATGCAAACCCTTTACAACAGCAATGGGTGGGACCTGTACGCTTGGGCCTTCCAAGCCACGGCGGACGAGGTGGTTATTCTGATCCATAACCCTGGCGAGGAGGAAGACCCGGCTTGTGGTCCCCTCATCGACGCCATTGCCATTAAGACTCTCTACCCTCCCAAGGCCTCCAATGATAATCTGGTGAAGAACGGCGATTTCGAAATAGGTCCATACGTGTTCCCCAACGCATCGTCGGGAGTTTTGGTCCCACCCAACATCGAAGACGACCACTCTCCGATCCCCGGCTGGATGGTGGAGTCTCTCAAGGCCGTTAAATACATCGATTCCGATCACTTCTCCGTCCCCAGCGGGAAGCGCGCCGTCGAGCTCGTCGCCGGAAAAGAGAGCGCCATAGCTCAGGTCGTCCGTACGGTTCCAGGGAGAACATACATCCTCTCGTTTGTCGTCGGCGATGCAAGCAACTCGTGCGAAGGATCCATGGTCGTCGAAGCGTTCGCCGGTAAAAACACTCTGAAAGTGCCGTACCAGTCAAAAGGCAACGGCGGATCGAAACCGGCGGCGCTGAAATTCGTGGCGGAGTCGACAAGAACACGTATTATGTTCCTCAGCACATTCTACACCATGCGAAGCGATGATTTCTCGTCGCTGTGTGGGCCGGTGCTCGATAAGGCCTCCCACGACCGTCGTTTACACTGTGCTTGCGTTCTGCTTTCCATTGCCGACCTCTGTTCATCTAAATTTCTACGCAGTTCTCTTCATTCCTTCATTCTCAGGTGCAGATACTCATTCTCAATGGCGCTGCCGAGTCAGGCCACCGTAGATTACCCTAGCTTCAAGCTTGTAATAGTCGGAGACGGTGGAACAGGGAAGACAACCTTTGTTAAACGTCATATAACTGGAGAGTTCGAGAAGAAATATGAACCGACAATCGGAGTTGAAGTTCATCCACTGGACTTCTTTACGAACTATGGAAAGATAAGGTTTTACTGCTGGGACACCGCTGGTCAGGAGAAGTTTGGTGGACTTAGAGATGGTTACTATATTCATGGACAGTGTGCCATCATCATGTTTGATGTCACTGCTCGTTTAACGTACAAAAACGTCCCAACATGGCACCGAGATCTCTGCAGGGTTTGTGAGAACATACCCATCGTGTTGTGTGGAAACAAGGTCGATGTGAAAAACAGACAGGTTAAAGCAAAGCAGGTGACCTTCCACAGGAAGAAAAATCTCCAGTACTACGAAATCTCTGCAAAGAGTAATTACAACTTCGAGAAGCCTTTCTTGTATCTTGCTAGAAAGCTTGCTGGGAATACGGAGCTCCACTTCGTCGAATCACCTGCCCTTGCTCCTCCTGAAGTCGAAATTAACTTGGCGGAACAAGCACAGCACGAAGCAGAGTTGGCACAAGCTGCTGCACAACCTCTACCTGATGAGGATGACGATGCTTTTGAGTGA 1863 52.23 MQTAAVIFFSVLLSAAAFHPALALVDGYLPNGDFERGPKASEMNGTVVKGQFAIPAWEISGFVEYIKSGQKQGDMLLVVPEGAFAVRLGNEASIKQKIKVVKGVYYSITFSAARTCAQEERLNISVAPDWGVLPMQTLYNSNGWDLYAWAFQATADEVVILIHNPGEEEDPACGPLIDAIAIKTLYPPKASNDNLVKNGDFEIGPYVFPNASSGVLVPPNIEDDHSPIPGWMVESLKAVKYIDSDHFSVPSGKRAVELVAGKESAIAQVVRTVPGRTYILSFVVGDASNSCEGSMVVEAFAGKNTLKVPYQSKGNGGSKPAALKFVAESTRTRIMFLSTFYTMRSDDFSSLCGPVLDKASHDRRLHCACVLLSIADLCSSKFLRSSLHSFILRCRYSFSMALPSQATVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNYGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVESPALAPPEVEINLAEQAQHEAELAQAAAQPLPDEDDDAFE 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1749229 1756370 + CmoCh12G002730.1 Cmo12g00273 392961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00273 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 593 IPR027417 -
Cmo12g00273 620 Pfam Ras family 414 570 IPR001806 GO:0003924|GO:0005525
Cmo12g00273 620 CDD Ran 413 578 - -
Cmo12g00273 620 SMART ras_sub_4 410 573 - -
Cmo12g00273 620 ProSiteProfiles small GTPase Ran family profile. 406 570 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cmo12g00273 620 PANTHER PLANT/F18G18-200 PROTEIN 8 358 - -
Cmo12g00273 620 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 567 589 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cmo12g00273 620 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 473 491 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cmo12g00273 620 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 529 547 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cmo12g00273 620 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 426 440 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cmo12g00273 620 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 493 514 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cmo12g00273 620 Pfam Protein of unknown function (DUF642) 194 358 IPR006946 -
Cmo12g00273 620 Pfam Protein of unknown function (DUF642) 27 183 IPR006946 -
Cmo12g00273 620 Gene3D - 403 618 IPR027417 -
Cmo12g00273 620 MobiDBLite consensus disorder prediction 600 620 - -
Cmo12g00273 620 PANTHER OS02G0527500 PROTEIN-RELATED 8 358 - -
Cmo12g00273 620 SMART rho_sub_3 415 569 IPR001806 GO:0003924|GO:0005525
Cmo12g00273 620 SMART ran_sub_2 418 619 - -
Cmo12g00273 620 TIGRFAM small_GTP: small GTP-binding protein domain 413 563 IPR005225 GO:0005525
Cmo12g00273 620 Gene3D - 26 183 - -
Cmo12g00273 620 ProSiteProfiles small GTPase Ras family profile. 404 604 IPR001806 GO:0003924|GO:0005525
Cmo12g00273 620 Gene3D - 189 349 - -
Cmo12g00273 620 ProSiteProfiles small GTPase Rab1 family profile. 407 609 - -
Cmo12g00273 620 SUPERFAMILY Galactose-binding domain-like 27 183 IPR008979 -
Cmo12g00273 620 SMART rab_sub_5 413 573 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00273 - - - csv:101219952 686.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00113 Cmo-Chr7:638782 Cmo12g00273 Cmo-Chr12:1749229 2.41E-119 dispersed
Cmo11g00554 Cmo-Chr11:2702633 Cmo12g00273 Cmo-Chr12:1749229 5.73E-148 dispersed
Cmo11g00555 Cmo-Chr11:2706126 Cmo12g00273 Cmo-Chr12:1749229 1.41E-147 dispersed
Cmo11g01616 Cmo-Chr11:11551751 Cmo12g00273 Cmo-Chr12:1749229 2.09E-40 dispersed
Cmo12g00273 Cmo-Chr12:1749229 Cmo14g01012 Cmo-Chr14:5464377 3.04E-124 dispersed
Cmo05g00416 Cmo-Chr5:1909967 Cmo12g00273 Cmo-Chr12:1749229 0 transposed
Cmo10g00615 Cmo-Chr10:2792194 Cmo12g00273 Cmo-Chr12:1749229 1.45E-127 wgd
Cmo12g00273 Cmo-Chr12:1749229 Cmo05g00415 Cmo-Chr5:1905272 1.50E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g439 . Blo12g01085 . Bda03g00062 . Bpe02g00576 Bma04g00060 . . Cmo12g00273 . . . . Sed08g0705 . . Bhi04g01002 Tan02g2699 Cmetu02g1205 . Hepe10g0272 . Lcy13g1760 . . . . . . . Cone4ag1810 Cone7ag1720 Cone17ag1037 Cone20ag0661 . . . Cme03g01644 . . . . . . . . . . . . Cma12g00321 . . . . . . . . . . . . . . . . . . . . Chy03g01146 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004712 2 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 5 0 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00273 Cmo_Chr12 FPKM 26.764299 26.842703 26.179506 24.607803 24.228102 25.551075 23.483564 27.148142 29.461739 29.721317