Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00274 ATGCTACAAACATCAAGGCCACCAGTAATGTTATTCATGGAAAATGTTGTTGGATTTGAGACATCTGACACACATACAAAAATGGTTGATATATTGGAAAAAGCTGATTTTTCTACGCAGGAGTTCATTTTAAGCCCAATGCATTTTGGTGTTCCATATTCCAGACCACGATACTTCTGCCTGGCTAAAAGGAGGCCTTTATCCTTTCAAAGGAAATTATACAATAATCAACCTCTTTGTCGTCCCAGTCCATTGCTCGAGATTGATGTTGACTTAGAAACCATTAAGAATCGTGGATCAGAAGCGACTTCTGACAAGTTGCTGTTAGGAATCACGACTGGCGATGCTGACTATCGATACGCGGAAATGGTGGATAAGGCTCATTTTCTGAAAGAGGCGACGCTCAAATATTGGACTTCTAGAGAGGTTGCTAACTTGCATTCCTTTCCGGAAGATTTTCAATTTCCACAGCATATTGGCCTTAGGCAACGACAAAAAGTGCTTATGATATTCATTTATCAAAATTTAATCGATGGCAGTAGTAATATATCAAACCAAACCTACTATGTCCAATTATATAGTGAATACACAACCAACCAACCGACTTCAATAAAGAACCACATAGGTCGGCCTTCCAAACTCAGAAAACCACAACCACAAACCACACCATAA 672 39.29 MLQTSRPPVMLFMENVVGFETSDTHTKMVDILEKADFSTQEFILSPMHFGVPYSRPRYFCLAKRRPLSFQRKLYNNQPLCRPSPLLEIDVDLETIKNRGSEATSDKLLLGITTGDADYRYAEMVDKAHFLKEATLKYWTSREVANLHSFPEDFQFPQHIGLRQRQKVLMIFIYQNLIDGSSNISNQTYYVQLYSEYTTNQPTSIKNHIGRPSKLRKPQPQTTP 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1756068 1759974 - CmoCh12G002740.1 Cmo12g00274 392962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00274 223 Gene3D Vaccinia Virus protein VP39 1 79 IPR029063 -
Cmo12g00274 223 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 6 167 IPR029063 -
Cmo12g00274 223 Pfam C-5 cytosine-specific DNA methylase 7 72 IPR001525 GO:0008168
Cmo12g00274 223 PANTHER TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE 122 168 - -
Cmo12g00274 223 PANTHER TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE 3 87 - -
Cmo12g00274 223 MobiDBLite consensus disorder prediction 201 223 - -
Cmo12g00274 223 Gene3D DNA Methylase, subunit A, domain 2 85 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00274 K15336 TRDMT1, DNMT2; tRNA (cytosine38-C5)-methyltransferase [EC:2.1.1.204] - csv:101219472 175.252
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00414 Cmo12g00274 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00274 Cmo-Chr12:1756068 Cmo05g00414 Cmo-Chr5:1898041 1.82E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g443 Blo01g01376 . Bda01g00733 . . Bpe02g00573 . . Cmo05g00414 Cmo12g00274 . Cma05g00403 . Car12g00304 Sed03g1593 Cpe07g00283 . Bhi04g01000 Tan02g2700 Cmetu03g2157 . Hepe10g0271 . Lcy13g1761 . . . . . . . Cone4ag1807 Cone7ag1715 . . . . . Cme03g01643 . . . . . . . . . . . . . . Car05g00337 Cpe11g00343 . . . . . . . . Cla08g01311 Cam08g1771 Cec08g1352 Cco08g1473 Clacu08g1467 . Cre08g1254 Lsi08g01175 . Chy03g01145 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008501 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00274 Cmo_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0