Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00279 ATGCAGGAGCCGGCGACGAGTTCCGCCGCCGCTAGTTCCTTGCCTTCGAGCAGCGAGAGGTCGTCCAGTTCGGCTCTTCACCTCGAAGTCAAAGAAGGTATGGAGAGCGATGAAGAGATCCGGAGAGTGCCGGATATGGTTGGTGAATCAGCCGGAACATCTGCCTCCGGGAGGGATACCGGTTCAGTCGCCGGTCCGGACCGGGTTCAGGTGTCTCGGGATGGTCAAAGGAAGAGAGGGAGAAGTCCGGCTGACAAAGAAAGCAAGAGACTGAAGAGATTGCTGAGGAATAGAGTATCGGCACAGCAAGCGAGGGAGAGAAAAAAGGCGTATTTGAATGATTTAGAGGTAAAGGTGAAGGATTTGGAGAAGAAGAACTTGGAGCTTGAAGAAAGGCTTTCCACTTTACAAAATGAGAATCAAATGCTTAGACAAATATTGAAGAACACAACGACAAGTCGGAGAAGTGGGGAATGA 477 50.73 MQEPATSSAAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPDMVGESAGTSASGRDTGSVAGPDRVQVSRDGQRKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLNDLEVKVKDLEKKNLELEERLSTLQNENQMLRQILKNTTTSRRSGE 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1791998 1793413 + CmoCh12G002790.1 Cmo12g00279 392967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00279 158 CDD bZIP_HY5-like 90 141 - -
Cmo12g00279 158 MobiDBLite consensus disorder prediction 30 45 - -
Cmo12g00279 158 Gene3D Single helix bin 108 149 - -
Cmo12g00279 158 Pfam bZIP transcription factor 86 147 IPR004827 GO:0003700|GO:0006355
Cmo12g00279 158 MobiDBLite consensus disorder prediction 1 107 - -
Cmo12g00279 158 Coils Coil 84 146 - -
Cmo12g00279 158 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 6 155 - -
Cmo12g00279 158 MobiDBLite consensus disorder prediction 1 24 - -
Cmo12g00279 158 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 6 155 IPR044280 GO:0000981|GO:0045944
Cmo12g00279 158 MobiDBLite consensus disorder prediction 71 107 - -
Cmo12g00279 158 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 150 IPR004827 GO:0003700|GO:0006355
Cmo12g00279 158 SUPERFAMILY Leucine zipper domain 89 147 IPR046347 GO:0003700|GO:0006355
Cmo12g00279 158 SMART brlzneu 85 149 IPR004827 GO:0003700|GO:0006355
Cmo12g00279 158 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 92 107 IPR004827 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01551 Cmo12g00279 CCT
Cmo05g00389 Cmo12g00279 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00279 Cmo-Chr12:1791998 Cmo14g00498 Cmo-Chr14:2469577 2.37E-07 dispersed
Cmo01g01551 Cmo-Chr1:11931626 Cmo12g00279 Cmo-Chr12:1791998 1.75E-50 wgd
Cmo12g00279 Cmo-Chr12:1791998 Cmo05g00389 Cmo-Chr5:1756069 1.37E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10708 PF00170 bZIP_1 1.60E-13 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00279 K16241 - csv:101218051 238.81