Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00281 ATGGTACTTCAGGCAACAACAATGGCTCTCCTCCTCGTCGTCTTCTTCTTCACGCACATTTCCATGGCTCGAGGAGACATTGGCACGGCCACAGCCTATGGCCCTCCATATCTACCCACCCTATGTAACGGGAACCGCGTCGATCAGTTCCCACCTGGCAACCTCTTCGTGGCGGTGAATGAAGGGCTCTGGGACAACGGCGCTGCTTGCGGTCGACGTTATAGATTAAGATGTTTGAGCGGACGAAATCACCCATGCAAGACTGATATCATCGAAGTTCAGGTGGTGAACTTCTGCCCCAAGTCCCCGTGCCCCTCTTCCTTTCTCATGTCCAAAGAGGCCTTCGCAGCTATCTCTCGCCTCCCCAATGCTAGACTCAACGTCGAGTATATCGAAATATAA 402 52.74 MVLQATTMALLLVVFFFTHISMARGDIGTATAYGPPYLPTLCNGNRVDQFPPGNLFVAVNEGLWDNGAACGRRYRLRCLSGRNHPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFAAISRLPNARLNVEYIEI 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1797442 1798193 + CmoCh12G002810.1 Cmo12g00281 392969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00281 133 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 7 132 - -
Cmo12g00281 133 Pfam Lytic transglycolase 58 130 IPR009009 -
Cmo12g00281 133 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 28 133 IPR007112 -
Cmo12g00281 133 SUPERFAMILY Barwin-like endoglucanases 14 130 IPR036908 -
Cmo12g00281 133 SMART dpbb_1 57 130 IPR007112 -
Cmo12g00281 133 Gene3D - 26 133 IPR036908 -
Cmo12g00281 133 PANTHER RLPA-LIKE PROTEIN, DOUBLE-PSI BETA-BARREL-RELATED 7 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00281 - - - cmax:111492001 227.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01329 Cmo-Chr5:10295481 Cmo12g00281 Cmo-Chr12:1797442 3.70E-22 dispersed
Cmo06g01712 Cmo-Chr6:11782486 Cmo12g00281 Cmo-Chr12:1797442 6.05E-27 dispersed
Cmo12g00269 Cmo-Chr12:1731091 Cmo12g00281 Cmo-Chr12:1797442 1.41E-30 dispersed
Cmo12g00281 Cmo-Chr12:1797442 Cmo05g00387 Cmo-Chr5:1751622 5.49E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g463 . . . . . . . . . Cmo12g00281 . . . Car12g00313 . Cpe07g00290 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00332 . . . . . . . . . . . . . . . . . . Lsi08g01195 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007057 2 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 0 2 1 1 1 1 2 1 1 1 1 2 3 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00281 Cmo_Chr12 FPKM 4.02257 5.026015 4.109567 3.69665 6.707992 7.892571 7.27853 6.831467 7.024582 7.026408