Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00282 ATGCAATCTCAATTTCTATTGCGTGTAATCAGCAATGCGGCAGCTTCAAGATCCAACCCTCGCGCGGCGGAGCAGAACTGTTTAGCGCTGCTTCAGGCCTGTAATTCGCTACCGAAGCTCACCCAAATCCACGCTCACATCTTCAAATTGGGCCTCCGCAACAACCCGCTCGTCCTCACCAAATTCGCCTCCATTTCCTCTGTTATCAATGCCACCGATTACGCTGCCTCCTTCTTGTTCTCTGCCGAAGCCGATACTCGGCTTTACGATGCGTTTCTATTCAATACTCTCATTAGAGCCTTTGCCCAAACTGGTCACTCGAAGGCTAGGGCACTGTCTTTGTATGGTATTATGCTTCACGATGGGATTTTGCCTAATAAATTCACTTACCCTTTTGTTTTGAAGGCTTGTGCTGGCCTTGAGGTTTTGAGTTTGGGTCAATCGGTTCATGGGTCGGTGGTGAAATTTGGGTTTGATCATGATGTTCATGTTCAGAATACTATGGTTCATATGTACTCTTGTTGCAGTGGTGGGATAATTTTTGCCCGCAAGGTGTTTGATGAAATGCCCAAGTCAGATTCTGTGACTTGGAGTGCGATGATTGGAGGGTATGCTCGTGTGGGGCGCTCCACTGAAGCAGTGGCCTTATTTAGGGAGATGCAAATGGCGGAGGTTTGCCCGGATGAGATCACTATGGTCTCTGTTCTTTCTGCTTGTACTGATTTGGGTGCCCTTGAACTTGGGAAATGGATTGAAGCTTATATAGAGAGACAAGGAATTCAGAAACCAGTAGAGGTTAGCAATGCACTTATTGATATGTTTGCAAAGTGTGGCGATATTGGTAAAGCTTTGAAGTTATTTAGAGCTATGAGTGATAAAACAATAGTTTCTTGGACTTCTGTGATTGTTGGCATGGCAATGCATGGCCGTGGCCTGGAGGCTATTTGTTTGTTTGAGGAGATGATAGGTTCGTCCAGTGTTGCTCCAGACGATGTCGCCTTTATCGGGTTGCTTTCCGCTTGCAGCCATTCGGGACTAGTCGAAAGAGGTAGAGAATATTTCAATTCTATGATGAAGAAATACAAGCTTGTTCCTAAGATAGAACATTATGGATGCATGGTGGACATGTATTGCAGGACTGGACTTGTGAAGGAGGCTCTTGAGTTCGTTCATAACATGCCGTTCGAGCCAAACCCGGTGATTTTACGAACGCTAGTCAGTGCTTGTCGTGGTCATGGTGAATTCAAGCTTGGTGAAAAGATCACCAAACTGTTAATGAGACATGAGCCTATGCATGAGTCAAACTATGTTTTGCTGTCCAACATTTATGCAAAGATGTTCAATTGGGAGAAGAAGACCAAAATTAGAGAAGTGATGGAAGTGAAAGGCATGAAAAAGGTTCCAGGAAGCACCATGATTGAGATAGATAATGAAATCTATGAATTTGTTGCTGGTGATAAATCTCATAAACAGTTCAAGGAAATTTACGCGATGGTGGACGAGATGGGGCGAGAGATGACGAAATCTGGATATCGACCTTCGACATCGGAAGTTTTGCTCGATATCAACGAAGAAGACAAAGAAGATACTTTGAATAGGCATAGTGAAAAACTGGCTATTGCATTTGGTCTTCTTAATACTCCACCAGGAACTCCGATTCGAATCGTAAAGAATTTGCGAGTTTGCACCGATTGCCACTCCGCTTCGAAGTTCATCTCGAAGATTTATGATCGTGAAATCATAATGAGGGACCGTAATCGGTTTCACCACTTCAAGGGTGGGCTGTGCTCGTGTGGAGATTTCTGGTTTCTTTGCCGCAACCAAAATAAGAAGCTAGTTTCTTCAGCTGACAGCTTGATCTCAAAGGCGATCGAACGAACAACTCGGCATGTCAAATTTCACTCTGTTTTGTTCAATCATTAA 1923 44.1 MQSQFLLRVISNAAASRSNPRAAEQNCLALLQACNSLPKLTQIHAHIFKLGLRNNPLVLTKFASISSVINATDYAASFLFSAEADTRLYDAFLFNTLIRAFAQTGHSKARALSLYGIMLHDGILPNKFTYPFVLKACAGLEVLSLGQSVHGSVVKFGFDHDVHVQNTMVHMYSCCSGGIIFARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSVLSACTDLGALELGKWIEAYIERQGIQKPVEVSNALIDMFAKCGDIGKALKLFRAMSDKTIVSWTSVIVGMAMHGRGLEAICLFEEMIGSSSVAPDDVAFIGLLSACSHSGLVERGREYFNSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVHNMPFEPNPVILRTLVSACRGHGEFKLGEKITKLLMRHEPMHESNYVLLSNIYAKMFNWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQFKEIYAMVDEMGREMTKSGYRPSTSEVLLDINEEDKEDTLNRHSEKLAIAFGLLNTPPGTPIRIVKNLRVCTDCHSASKFISKIYDREIIMRDRNRFHHFKGGLCSCGDFWFLCRNQNKKLVSSADSLISKAIERTTRHVKFHSVLFNH 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1799563 1802400 + CmoCh12G002820.1 Cmo12g00282 392970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00282 640 Pfam Pentatricopeptide repeat domain 90 138 IPR002885 -
Cmo12g00282 640 PANTHER - 26 589 - -
Cmo12g00282 640 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 589 - -
Cmo12g00282 640 Pfam E+ motif 479 506 IPR046849 -
Cmo12g00282 640 Gene3D Tetratricopeptide repeat domain 145 247 IPR011990 GO:0005515
Cmo12g00282 640 TIGRFAM PPR: pentatricopeptide repeat domain 195 229 IPR002885 -
Cmo12g00282 640 TIGRFAM PPR: pentatricopeptide repeat domain 370 393 IPR002885 -
Cmo12g00282 640 TIGRFAM PPR: pentatricopeptide repeat domain 296 330 IPR002885 -
Cmo12g00282 640 TIGRFAM PPR: pentatricopeptide repeat domain 268 292 IPR002885 -
Cmo12g00282 640 Gene3D Tetratricopeptide repeat domain 248 322 IPR011990 GO:0005515
Cmo12g00282 640 Pfam PPR repeat family 193 239 IPR002885 -
Cmo12g00282 640 Pfam DYW family of nucleic acid deaminases 510 602 IPR032867 GO:0008270
Cmo12g00282 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Cmo12g00282 640 Gene3D Tetratricopeptide repeat domain 323 488 IPR011990 GO:0005515
Cmo12g00282 640 Gene3D Tetratricopeptide repeat domain 6 144 IPR011990 GO:0005515
Cmo12g00282 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Cmo12g00282 640 Pfam PPR repeat 369 393 IPR002885 -
Cmo12g00282 640 Pfam PPR repeat 296 323 IPR002885 -
Cmo12g00282 640 Pfam PPR repeat 268 293 IPR002885 -
Cmo12g00282 640 Pfam PPR repeat 336 360 IPR002885 -
Cmo12g00282 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 365 IPR002885 -
Cmo12g00282 640 Pfam E motif 412 474 IPR046848 -
Cmo12g00282 640 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 125 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00282 - - - csv:101208624 1091.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01697 Cmo-Chr4:8603211 Cmo12g00282 Cmo-Chr12:1799563 2.76E-164 dispersed
Cmo07g00074 Cmo-Chr7:470182 Cmo12g00282 Cmo-Chr12:1799563 4.44E-179 dispersed
Cmo12g00282 Cmo-Chr12:1799563 Cmo01g01108 Cmo-Chr1:9205514 3.69E-173 dispersed
Cmo14g00465 Cmo-Chr14:2246874 Cmo12g00282 Cmo-Chr12:1799563 2.35E-158 dispersed
Cmo14g00595 Cmo-Chr14:3012780 Cmo12g00282 Cmo-Chr12:1799563 1.53E-107 dispersed
Cmo12g00282 Cmo-Chr12:1799563 Cmo10g00608 Cmo-Chr10:2749382 6.56E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g465 . . . . . . . . . Cmo12g00282 . . . Car12g00314 . . . Bhi04g00972 . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01266 Bpe14g00577 . . . . . . . Cma12g00333 . . . . . . . . . . . . . . . . . . Lsi08g01196 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00282 Cmo_Chr12 FPKM 2.10609 3.10895 2.770501 2.294205 4.063686 3.488478 4.601252 3.210444 3.073435 3.440431