Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00285 ATGGGAGAAACAAGAGACAACGAATATGAGGAAGAGCTCCTCGACTATGAGGAAGAGGAAGAGAAGGCACCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTTGGAATTCACAGTTCGGGATTCAGAGACTTCCTATTGAAGCCGGAGCTTCTCCGTGCTATTGTGGACTCGGGATTTGAGCATCCATCTGAAGTGCAACACGAATGTATTCCCCAAGCTATCCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTGTCAACATTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCCCTAGTTCTGTGCCATACTAGGGAGCTTGCATACCAGATCTGTCATGAGTTCGAAAGGTTCAGCACTTATCTTCCCGATCTGAAAGTTGCAGTCTTCTATGGTGGGGTGAATATTAAAATTCACAAAGATCTTCTGAAGAACGAATGCCCTCATATTGTTGTTGGAACACCCGGAAGGATATTGGCATTGACAAGAGACAAGGACCTTTCCCTGAAGAATGTGCGGCATTTTATCTTGGATGAATGTGACAAGATGCTTGAGTCACTTGATATGCGGAGGGATGTACAGGAAATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCGGCGACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTCGATGACGAGGCAAAGTTGACATTGCATGGTCTTGTCCAGCACTACATCAAACTGAGCGAGATGGAGAAAAATCGGAAGTTGAACGACCTCCTTGATGCATTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAGTAGGGCAGCTGAGCTGGATAAGTTATTGGTGGAGTGTAATTTTCCATCTATATGTATCCATTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGATACAAGGGTTTCAAGGAAGGACATAAGCGGATTCTTGTGGCAACAGATTTGGTTGGTCGAGGAATTGACATTGAACGCGTAAACATTGTCATCAACTATGACATGCCAGATTCTGCTGATACTTACCTGCACAGGGTTGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCAATTACTTTTGTATCATCTGCAGCTGATTCTGATGTTCTCAACAATGTTCAAGAAAGGTTCGAAGTAGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACATACAGTATTGCCATCATAGATGTAGAGATCTTCAGCATAGAATATCAGCTACCTGGGTTGCCTTTGTGGTTCACATGTCATTGTGGTTCGAATCCAAATCGGACTCGAAATGGATGGAAGCCACTGGCACTAGGCTTGGGTGCGAGAGGTTTATTGTATTCTAATTGCTGGGGCTGTCTTGCATGGGAAGTCTCTTTATGA 1470 43.67 MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYSIAIIDVEIFSIEYQLPGLPLWFTCHCGSNPNRTRNGWKPLALGLGARGLLYSNCWGCLAWEVSL 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1809619 1814058 - CmoCh12G002850.1 Cmo12g00285 392973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00285 489 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Cmo12g00285 489 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Cmo12g00285 489 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Cmo12g00285 489 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 28 422 - -
Cmo12g00285 489 Pfam Helicase conserved C-terminal domain 276 383 IPR001650 -
Cmo12g00285 489 Gene3D - 42 258 IPR027417 -
Cmo12g00285 489 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 28 422 - -
Cmo12g00285 489 SMART ultradead3 65 266 IPR014001 -
Cmo12g00285 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 394 IPR027417 -
Cmo12g00285 489 MobiDBLite consensus disorder prediction 1 22 - -
Cmo12g00285 489 CDD SF2_C_DEAD 263 392 - -
Cmo12g00285 489 CDD DEADc_DDX39 45 252 - -
Cmo12g00285 489 Gene3D - 259 427 IPR027417 -
Cmo12g00285 489 MobiDBLite consensus disorder prediction 1 29 - -
Cmo12g00285 489 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 423 IPR001650 -
Cmo12g00285 489 SMART helicmild6 302 383 IPR001650 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00386 Cmo12g00285 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00285 Cmo-Chr12:1809619 Cmo14g02087 Cmo-Chr14:15169170 8.11E-80 dispersed
Cmo12g00285 Cmo-Chr12:1809619 Cmo05g00386 Cmo-Chr5:1738046 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00285 K12812 - csv:101217346 828.165