Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00286 ATGTCCTCCGAGTGGCTCCTAGCACCAGCATATTGGCACCAGAGACCAAAGACTGCGTCCAGTTCACGAACCAGCTCGCTCAACACCTTCAATGGCGATCTTCCTGGTTGTAGGCCGCCACGAATCGGTTGCGGCGCCGCCAAAATCTCAACTTTTCCCCGACACAAAGGCTCGTGTTCTTGGGCAATTGGTGAAGAATCTACCTCCAATTCTTACGACTTTACGACATGTCGGCTGAACGGGATTGACGTGTCGGCCTCTCTCCACCGCGATTTAGTGCTTTTCTTTGGCTGGAGACGCGTAAATAGCTCGAATGAGAGAAGAAGCTGTCGTGGACGCTGCACTGGACCTGCATTAGGTGATGCAATGGACGGGCCGTCTACTGGTCTGAGAGTCGAAGACCAAGAAGCTAAGAAACAATGCTTACCCGAAAATTTCGCAAGCTCTAGCACGTGTGAAATGGACAACAGTACAGTTTGGTCTCAAAGGAGCATGGCATCAGCTCAGTCGCATGATTCCCATAACAATGTTGGGAGCAGTACAGAGTTTGTAAATTCTGGACTACTTCTTTGGAACGAAACCCGGAAGCAATGGGTCGGAAATAAAACGTCCGAGAGCCAAAAGCGAGTTCGAGAACCCAAAATAAGTTGGAATGCTACTTACGACAGCTTACTTACGACGAACAAACCATTCCCGGAGGCCATACCTCTAGCTGAGATGATAGAGTTTCTTGTTGATGTCTGGGAGCAGGAGGGCCTGTATGACTGA 768 49.74 MSSEWLLAPAYWHQRPKTASSSRTSSLNTFNGDLPGCRPPRIGCGAAKISTFPRHKGSCSWAIGEESTSNSYDFTTCRLNGIDVSASLHRDLVLFFGWRRVNSSNERRSCRGRCTGPALGDAMDGPSTGLRVEDQEAKKQCLPENFASSSTCEMDNSTVWSQRSMASAQSHDSHNNVGSSTEFVNSGLLLWNETRKQWVGNKTSESQKRVREPKISWNATYDSLLTTNKPFPEAIPLAEMIEFLVDVWEQEGLYD 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1814981 1819264 + CmoCh12G002860.1 Cmo12g00286 392974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00286 255 PANTHER OS07G0479600 PROTEIN 103 255 - -
Cmo12g00286 255 PANTHER DUF4050 FAMILY PROTEIN 103 255 - -
Cmo12g00286 255 Pfam Protein of unknown function (DUF4050) 150 213 IPR025124 -
Cmo12g00286 255 Pfam Protein of unknown function (DUF4050) 213 255 IPR025124 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00286 - - - cmax:111496323 308.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00148 Cmo-Chr1:640847 Cmo12g00286 Cmo-Chr12:1814981 1.93E-27 dispersed
Cmo05g01311 Cmo-Chr5:10177313 Cmo12g00286 Cmo-Chr12:1814981 5.04E-11 dispersed
Cmo11g00542 Cmo-Chr11:2639641 Cmo12g00286 Cmo-Chr12:1814981 2.15E-47 dispersed
Cmo12g00286 Cmo-Chr12:1814981 Cmo15g00511 Cmo-Chr15:2360285 2.44E-23 dispersed
Cmo10g00585 Cmo-Chr10:2663974 Cmo12g00286 Cmo-Chr12:1814981 1.03E-38 wgd
Cmo12g00286 Cmo-Chr12:1814981 Cmo12g01233 Cmo-Chr12:10996556 4.59E-23 wgd
Cmo12g00286 Cmo-Chr12:1814981 Cmo17g00828 Cmo-Chr17:7768378 1.17E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g481 . . . . . . . . . Cmo12g00286 . . . Car12g00318 . Cpe07g00295 . Bhi04g00955 . . . Hepe10g0252 . . . . . . . . . . . Cone17ag1022 . . . . . . . . . . . . . . . . . Cma12g00337 . . . . . . . . . . . Cla08g01333 Cam08g1795 Cec08g1374 . Clacu08g1489 . . . . Chy03g01121 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012949 0 5 0 0 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 4 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00286 Cmo_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 5.638688 4.104795 6.348499