Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00287 ATGGCTAAGATCTTTGGTTTTACTCTCACAGAGAGTGAGGATTTTTTCTCTGGGGCACCGATCTATCAGAACCCCAAGGATACTAGTCTCTTTTTGTCCCTTGGTCGTCGGGTGGATGTTTATTATCCTCTTCGCAAGAGGTCCCGAGCTACTGAATCATTTGTGGCTAGTGGAGAAATACTCAAAAAGAAGAAGACATCTATTGAAATCCTTCCAGACGAGTGTCTATTTGAGGTGTTCAGGCGCCTGCCTGATAGAGAAACGAGGAGCCTCTGTGCTTGCGTTTCTAAACGCTGGCTCATGCTTTTAAGCAGCATTAGTGGAAATGAGTTTTACAGCGCTTCTGAAAATTTGAGGCCAGAGAATGTTGTGGCTGTAAATGAGACAGATAACAAAGTTGAGAACGATGGACATCTATCACGAAACTTGGAAGGGGAGAAGGCATCAGATATAAGACTAGCTGCTATAGCAGTAGGAACTGCTAGTTGCGGTGGCTTGGGCAAGCTATCAATTCGTGGTGGCATTCATGGCTCAAAGGTTTCCAACATTGGCCTTAAGGCTGTTGCTCGTGGATGTCCTTCCCTTAAAGCTATTTCTTTGTGGAATTTGTCTTCTATAGGAGATGAAGGTCTGATTGAAATTGCCAAGGGATGTCAATTCCTTGAGAAGCTTGATTTATGTCAATGTCCTGGAATTTCAAACAAGGCTTTGCTAGAACTTGCAAAAAACTGCCCTAATCTGACTGATATAACAATCGAGTCTTGTGCAAACATTGGCAATGAAGGCCTTCAAGCTCTTGGGCAATATTGTTCCAATTTGAAGTCTATTTCGATTAGAGACTGCCCCCTTATCGGGGATCAAGGACTAGCAAGCTTGTTCTTTTCTACCGCTGATACCTTAAGCAAGGTGAAGCTTCAGGGTCTAAATGTCACCGATATGTCGCTTGCTGTCATCGGACATTATGGAAGGGCAGTTACGGACCTTATGCTCACTGGCCTTACAAATGTTACTGAGAAGGGATTTTGGGTCATGGGCAATGGTCATGGTTTGCAAAAGTTGAAATCATTTACACTTTCATCTTGCCATGGTGTGACTGACGTAGGGCTACAATCCATTGCCAAGGGATGCCCAAACTTGAAAAAATTCTGCTTGCGCAAGTGTTCGTTTTTATCGGACAAGGGCATGGTCTCTTTCACGCAGGCTGCCTTATCCATCGAGAACTTACAATTAGAAGAGTGCCACAGGATAACCCAATTGGGTTTATTTGGTACCATCTTAAACTGTGGAGCAAAGCTAAAGGCACTTTCTCTAGTAAACTGCTTAGGGATCAAGGATTTGAGCCTGAACTTGCCTTCTACCACCCCGTGCAAGTCGCTGCAGTCATTATCCATCTGCAACTGCCCTGGGTTTGGTAATGTAAGCTTAACTCTTTTGAGCAAGCTGTGCCCCCAGCTTCAGCACGTGAATTTATCTGGGCTCAGTGGTATTTCAGATTCTGGTCTATTGCCATTGCTTAAGAACTGTGAGGCAGGATTGGTGAATGTCAATTTGAGTGGCTGTGTGAATCTAACTGACAAAGTTATTTCATCCTTGACCAAGCTTCATGGTTGGACTCTTGAAGTGCTCAATGTTGATGGTTGTTCAAAGGTCACCGATTCGAGTTTGGTGGCAATTTCCGAGAACTGTCCACTGCTCAATGATCTCGACGTTTCCAAATGTGGCATCACTGATTTTGGGGTTGCAGCCCTTGCTCAAGCTAACCAGTTCAACCTGCAGATCCTTTCTGTGTTTGGGTGTTCTGCCTTAACTGACAAGAGCTTGTTTACTCTTATGAAATTGGGTGACTCCCTTTTAGGCTTGAATCTTCGGAACTGCAACTTAATCAGCACCAGGAGTATCGAGCTGCTTTTAGCTCAGCTCCTTCGGTGTGACATCCTTTACTGA 1944 44.34 MAKIFGFTLTESEDFFSGAPIYQNPKDTSLFLSLGRRVDVYYPLRKRSRATESFVASGEILKKKKTSIEILPDECLFEVFRRLPDRETRSLCACVSKRWLMLLSSISGNEFYSASENLRPENVVAVNETDNKVENDGHLSRNLEGEKASDIRLAAIAVGTASCGGLGKLSIRGGIHGSKVSNIGLKAVARGCPSLKAISLWNLSSIGDEGLIEIAKGCQFLEKLDLCQCPGISNKALLELAKNCPNLTDITIESCANIGNEGLQALGQYCSNLKSISIRDCPLIGDQGLASLFFSTADTLSKVKLQGLNVTDMSLAVIGHYGRAVTDLMLTGLTNVTEKGFWVMGNGHGLQKLKSFTLSSCHGVTDVGLQSIAKGCPNLKKFCLRKCSFLSDKGMVSFTQAALSIENLQLEECHRITQLGLFGTILNCGAKLKALSLVNCLGIKDLSLNLPSTTPCKSLQSLSICNCPGFGNVSLTLLSKLCPQLQHVNLSGLSGISDSGLLPLLKNCEAGLVNVNLSGCVNLTDKVISSLTKLHGWTLEVLNVDGCSKVTDSSLVAISENCPLLNDLDVSKCGITDFGVAALAQANQFNLQILSVFGCSALTDKSLFTLMKLGDSLLGLNLRNCNLISTRSIELLLAQLLRCDILY 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1823603 1827443 + CmoCh12G002870.1 Cmo12g00287 392975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00287 647 Gene3D Ribonuclease Inhibitor 130 242 IPR032675 -
Cmo12g00287 647 SUPERFAMILY RNI-like 178 421 - -
Cmo12g00287 647 Gene3D - 62 107 - -
Cmo12g00287 647 Gene3D Ribonuclease Inhibitor 243 452 IPR032675 -
Cmo12g00287 647 SUPERFAMILY RNI-like 322 645 - -
Cmo12g00287 647 Pfam F-box domain 71 107 IPR001810 GO:0005515
Cmo12g00287 647 PANTHER UNCHARACTERIZED 17 638 - -
Cmo12g00287 647 PANTHER - 17 638 - -
Cmo12g00287 647 SUPERFAMILY F-box domain 64 105 IPR036047 GO:0005515
Cmo12g00287 647 SMART LRR_CC_2 588 613 IPR006553 -
Cmo12g00287 647 SMART LRR_CC_2 270 295 IPR006553 -
Cmo12g00287 647 SMART LRR_CC_2 562 586 IPR006553 -
Cmo12g00287 647 SMART LRR_CC_2 192 217 IPR006553 -
Cmo12g00287 647 SMART LRR_CC_2 218 243 IPR006553 -
Cmo12g00287 647 SMART LRR_CC_2 376 401 IPR006553 -
Cmo12g00287 647 SMART LRR_CC_2 456 481 IPR006553 -
Cmo12g00287 647 SMART LRR_CC_2 350 375 IPR006553 -
Cmo12g00287 647 SMART LRR_CC_2 244 269 IPR006553 -
Cmo12g00287 647 SMART LRR_CC_2 482 507 IPR006553 -
Cmo12g00287 647 SMART LRR_CC_2 402 427 IPR006553 -
Cmo12g00287 647 SMART LRR_CC_2 509 534 IPR006553 -
Cmo12g00287 647 SMART LRR_CC_2 536 561 IPR006553 -
Cmo12g00287 647 Pfam Leucine Rich repeat 269 292 IPR001611 GO:0005515
Cmo12g00287 647 Pfam Leucine Rich repeat 562 584 IPR001611 GO:0005515
Cmo12g00287 647 Pfam Leucine Rich repeat 351 373 IPR001611 GO:0005515
Cmo12g00287 647 Pfam Leucine Rich repeat 244 266 IPR001611 GO:0005515
Cmo12g00287 647 Gene3D Ribonuclease Inhibitor 453 645 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00287 K14515 EBF1_2; EIN3-binding F-box protein - csv:101216639 1107.05
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g00469 Cmo12g00287 CCT
Cmo01g01560 Cmo12g00287 CCT
Cmo01g01560 Cmo12g00287 ECH
Cmo09g00469 Cmo12g00287 ECH
Cmo05g00383 Cmo12g00287 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01310 Cmo-Chr5:10169929 Cmo12g00287 Cmo-Chr12:1823603 1.99E-17 dispersed
Cmo08g01154 Cmo-Chr8:7374345 Cmo12g00287 Cmo-Chr12:1823603 9.15E-34 dispersed
Cmo12g00287 Cmo-Chr12:1823603 Cmo17g00271 Cmo-Chr17:1620433 6.00E-17 dispersed
Cmo20g00346 Cmo-Chr20:1693377 Cmo12g00287 Cmo-Chr12:1823603 2.89E-12 dispersed
Cmo11g01759 Cmo-Chr11:12414326 Cmo12g00287 Cmo-Chr12:1823603 8.20E-08 transposed
Cmo01g01560 Cmo-Chr1:11995305 Cmo12g00287 Cmo-Chr12:1823603 0 wgd
Cmo10g00584 Cmo-Chr10:2659012 Cmo12g00287 Cmo-Chr12:1823603 0 wgd
Cmo12g00287 Cmo-Chr12:1823603 Cmo12g01232 Cmo-Chr12:10988981 0 wgd
Cmo12g00287 Cmo-Chr12:1823603 Cmo17g00848 Cmo-Chr17:7866804 4.68E-09 wgd
Cmo12g00287 Cmo-Chr12:1823603 Cmo05g00383 Cmo-Chr5:1722719 0 wgd
Cmo12g00287 Cmo-Chr12:1823603 Cmo08g00593 Cmo-Chr8:3604846 1.21E-07 wgd
Cmo12g00287 Cmo-Chr12:1823603 Cmo09g00469 Cmo-Chr9:2105356 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g482 Blo01g01387 Blo12g01077 Bda01g00745 Bda03g00070 . Bpe02g00562 Bma04g00067 . Cmo05g00383 Cmo12g00287 Cma01g01503 Cma05g00382 Car09g00403 Car12g00319 Sed01g1375 Cpe07g00296 Cpe06g00342 Bhi04g00953 Tan02g2722 Cmetu03g1877 . Hepe10g0251 . Lcy13g1790 Cla05g01740 Cam05g1853 Cec05g1865 Cco05g1927 Clacu05g1843 Cmu05g1724 Cre05g1857 Cone4ag1785 Cone7ag1700 Cone17ag1021 Cone20ag0670 Lsi04g02132 Csa03g04337 Chy04g00365 Cme03g01616 . . . . . Bpe04g00055 . . Sed05g1700 Cmo01g01560 Cmo09g00469 Cma09g00460 Cma12g00338 . Car05g00325 Cpe11g00327 Cpe02g00452 Bhi09g02242 Tan01g3650 Cmetu04g1455 . Hepe01g2024 Mch11g0558 . Cla08g01334 Cam08g1796 Cec08g1375 Cco08g1503 Clacu08g1490 . Cre08g1277 Lsi08g01205 . Chy03g01120 Cme04g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012947 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00287 Cmo_Chr12 FPKM 19.288288 21.600494 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0