Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00288 ATGACTTCCACCTTCTCCTACCTGCCGCCGTGCAACGCCGCCGTCTCCTCGTCATCTCTCAGACACTATCTCAAGCCAAAAGTTCCCGCGCTATCGTCACCTTCGACGGTACCATTTCGCTCTAAAACTGCCATCAATTGTTCTTCCCCCGCTCATGCCGATGCTTCTGTTCCGACCGATTTCTGCTTTCTGAAGAAGAGGGAATTTGTCTTTTCTGCCGCGCTGCCATTTCTTATTTTGCTTGAATCCGTGGAAGTCTTTAGAGCCGAGGCGGCAGAAAGATTGGATAGAAGTGAAGATGAACGGATAAGAGAAGAAGTAAGAAAGGTAGTAACCAAAGGCAGGGCTCCTGGTCTGCTTCGTCTGGTGTTTCACGATGCTGGAACCTTTGAAATGAACGATAATTCAGGTGGTATGAATGGGTCTATCATTCACGAACTTAATAGACCTGAAAACAAAGGTCTCAAGAAGTCAGTTAAGATTCTTGAAGAAGCAAAGAGTAAACTGGATTTAATAAGACCAGACTTAATAGCAGTGGCTGGCGCTGAAGCAGTTTCAATATGTGGAGGTCCAATTATTGCTGTTGAGTTGGGTAGATTAGACTTTGGGAAGCCAGATCCTGAAGGTAAACTTCCTGAAGAATCCTTGGATGCTGTTGGACTGAAGCAAATCTTCAGCAAAAAAGGATTCGCAACACGGGAACTAGTTGCTCTATCTGGAGCCCATACTATTGGTGGTAAAGGTTTTGGAAGCCCTGTTGTTTTTGATAATGCATATTTCAAAATCCTTTTGGAGAAGCCATGGTCATCTAAGGGTGGTATGTCCAGTATGATAGGGCTGCCTTCTGATCGTGCTCTTGCTGATGATGATGAATGCTTGAGATGGATCAAAGAGTACGCCAACAATCAGAATGTGTTCTTCGAAGATTTCCAGAATGCTTATATCAAGCTAGTGAATTCTGGTGCGAAGTGGAAAAGCTAG 981 44.55 MTSTFSYLPPCNAAVSSSSLRHYLKPKVPALSSPSTVPFRSKTAINCSSPAHADASVPTDFCFLKKREFVFSAALPFLILLESVEVFRAEAAERLDRSEDERIREEVRKVVTKGRAPGLLRLVFHDAGTFEMNDNSGGMNGSIIHELNRPENKGLKKSVKILEEAKSKLDLIRPDLIAVAGAEAVSICGGPIIAVELGRLDFGKPDPEGKLPEESLDAVGLKQIFSKKGFATRELVALSGAHTIGGKGFGSPVVFDNAYFKILLEKPWSSKGGMSSMIGLPSDRALADDDECLRWIKEYANNQNVFFEDFQNAYIKLVNSGAKWKS 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1827663 1831967 - CmoCh12G002880.1 Cmo12g00288 392976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00288 326 PANTHER L-ASCORBATE PEROXIDASE 6-RELATED 35 325 - -
Cmo12g00288 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 234 244 IPR019793 -
Cmo12g00288 326 Gene3D Peroxidase, domain 2 212 314 - -
Cmo12g00288 326 ProSitePatterns Peroxidases active site signature. 116 127 IPR019794 GO:0004601
Cmo12g00288 326 Coils Coil 88 108 - -
Cmo12g00288 326 Gene3D - 104 321 - -
Cmo12g00288 326 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 35 325 IPR044831 GO:0004601|GO:0034599
Cmo12g00288 326 PRINTS Haem peroxidase superfamily signature 116 130 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo12g00288 326 PRINTS Haem peroxidase superfamily signature 234 249 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo12g00288 326 PRINTS Haem peroxidase superfamily signature 189 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo12g00288 326 PRINTS Haem peroxidase superfamily signature 171 188 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo12g00288 326 PRINTS Plant ascorbate peroxidase signature 134 144 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo12g00288 326 PRINTS Plant ascorbate peroxidase signature 210 227 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo12g00288 326 PRINTS Plant ascorbate peroxidase signature 146 170 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo12g00288 326 PRINTS Plant ascorbate peroxidase signature 189 201 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo12g00288 326 PRINTS Plant ascorbate peroxidase signature 116 131 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo12g00288 326 PRINTS Plant ascorbate peroxidase signature 228 249 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo12g00288 326 PRINTS Plant ascorbate peroxidase signature 298 322 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cmo12g00288 326 SUPERFAMILY Heme-dependent peroxidases 112 323 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo12g00288 326 Pfam Peroxidase 104 302 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo12g00288 326 ProSiteProfiles Plant heme peroxidase family profile. 116 326 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00288 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101216396 516.924
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00557 Cmo-Chr9:2661068 Cmo12g00288 Cmo-Chr12:1827663 3.65E-13 dispersed
Cmo12g00288 Cmo-Chr12:1827663 Cmo19g00742 Cmo-Chr19:7621692 4.31E-39 dispersed
Cmo12g00288 Cmo-Chr12:1827663 Cmo20g00491 Cmo-Chr20:2304630 5.20E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g484 . . . . . . . . . Cmo12g00288 . . . Car12g00320 . Cpe07g00297 . Bhi04g00949 Tan02g2724 . . Hepe10g0250 . . . . . . . . . . . Cone17ag1019 . . . . Cme03g01615 Blo17g00021 . . Bda13g01263 Bpe14g00580 . . Bma02g00025 . . . . Cma12g00339 . . . . . . . . . . . Cla08g01335 Cam08g1797 Cec08g1376 Cco08g1504 Clacu08g1491 . Cre08g1278 Lsi08g01206 . Chy03g01119 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007203 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo12g00288 Cmo_Chr12 FPKM 8.878345 7.568822 25.607737 25.887901 3.875573 4.285545 3.346701 42.562229 46.613514 46.317513