Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00302 ATGGCTTTCCGGGACCAACTCTCTCGGGGACTTCCTCTCCATTACGGGAACCAGCCTCCGGAGGAGCAGTCGGAACGGCCGCTTGATAGCACTCTGCGCTCTATTTTATCTGATCAGCTTACTGACCACTCTCCGGCTGGCGATGGTTCTAAGTCTGAGCATCTGCTTCAGAGCACTCCGAATTGGTTGAATAGTGCGCTACTTCGGAATCAAACACCTCATTCTCAGTATTCTGGTGATTCCATGACGACCGCTGCGGATAAGGACATCACCGACTTCCTTAATCTTCACACGACGGGTTCTAATTCTGCTGTGTCTCATCCGACCGGTCAATGGCTCTCCCGTCCGATCCTCCATCGCGATCATAGTGATGTTATTGATGAAGTTGCCGATGCTTCCGATGCTATGATTGGCGCCACGACCACTTTGTCGCGCGAATCGGATGATTTGAAGAACAATAGCTGCGGCGGCGGCGGGGAGGGTGTGAACAACAGTGACGATGTGGCGATTGAGAGCGATGGTAATGAAGGTGCTCATTGTGAAGAGGCGGCAGTGAATTGGCAGAATGCGCGGGCTAAGGCTGAAATTCTGGCGCATCCACTTTACGAGCAGTTGCTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACACCGGTGGATCAGTTGCCGAGGATAGATTCTCAGCTTGCTGAGTCTCAGAATGTGGCGGCGAAGTACTCGTCGCTGGGGCACGGTTCTCAGCCCGTAGTCGGAAATGGAAAAGAGATCGATCAGTTCATGACGCATTATGTTCTATTACTTTGTTCGTTTAAAGAACAACTTCAGCAGCATGTCCGCTTCCATGCAATGGAAGCTGTGTATGCCTGCTGGGAAATTGAGCAATCTTTGCAGAGCTTGACAGGTGTTTCACCTGGTGAAGGTACGGGTGCTACCATGTCTGATGATGAGGAAGACCAGATAGATAACGATGCTATTATGTTTGATGGATGTTTGGAGGGTCATGATGCTACGGGATTTGGTCCCCTTATCCTTACAGAGAGTGAGAAATCCTTGATGGAGAGGGTGAGGCACGAATTGAAGCATGAATTAAAGAATGGTTACAAGGAGAAAATTGTAGACATCAGGGAGGAAATTTTACGAAAGAGGAGAGCAGGTAAACTTCCTGGTGGCACTACGTCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATACCCTACTGAGGAAGATAAGGCAAAGTTGGTTCAGGAAACCGGTCTGCAACTGAAGCAGATAAATAACTGGTTTATCAACCAAAGGAAGAGGAATTGGCACGCCAATCCTTCAACCACAACAACCATGAAGACCAAACGCAAAAGCTCGAGAAAGAACCCGATCCCACGATTTCTTGTTGTATGCATAAGGTATAACCCAAACAAATTCGAAGCATTACTGAAATACAGTTCGTTACCTAGTGCAGAGAATGAAACTGGGACTTGA 1485 48.62 MAFRDQLSRGLPLHYGNQPPEEQSERPLDSTLRSILSDQLTDHSPAGDGSKSEHLLQSTPNWLNSALLRNQTPHSQYSGDSMTTAADKDITDFLNLHTTGSNSAVSHPTGQWLSRPILHRDHSDVIDEVADASDAMIGATTTLSRESDDLKNNSCGGGGEGVNNSDDVAIESDGNEGAHCEEAAVNWQNARAKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLAESQNVAAKYSSLGHGSQPVVGNGKEIDQFMTHYVLLLCSFKEQLQQHVRFHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDEEDQIDNDAIMFDGCLEGHDATGFGPLILTESEKSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGGTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHANPSTTTTMKTKRKSSRKNPIPRFLVVCIRYNPNKFEALLKYSSLPSAENETGT 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1887315 1892198 - CmoCh12G003020.1 Cmo12g00302 392990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00302 494 SMART KNOX1_2 190 234 IPR005540 GO:0003677|GO:0005634
Cmo12g00302 494 CDD homeodomain 392 440 IPR001356 GO:0003677
Cmo12g00302 494 ProSiteProfiles 'Homeobox' domain profile. 378 441 IPR001356 GO:0003677
Cmo12g00302 494 ProSiteProfiles ELK domain profile. 358 378 IPR005539 GO:0003677
Cmo12g00302 494 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 459 - -
Cmo12g00302 494 Pfam KNOX2 domain 250 300 IPR005541 GO:0003677|GO:0005634
Cmo12g00302 494 Pfam ELK domain 358 379 IPR005539 GO:0003677
Cmo12g00302 494 Pfam Homeobox KN domain 398 437 IPR008422 GO:0003677|GO:0006355
Cmo12g00302 494 Gene3D - 379 441 - -
Cmo12g00302 494 SMART HOX_1 380 445 IPR001356 GO:0003677
Cmo12g00302 494 SMART ELK_2 358 379 IPR005539 GO:0003677
Cmo12g00302 494 MobiDBLite consensus disorder prediction 148 175 - -
Cmo12g00302 494 SMART KNOX2_2 246 301 IPR005541 GO:0003677|GO:0005634
Cmo12g00302 494 SUPERFAMILY Homeodomain-like 381 443 IPR009057 -
Cmo12g00302 494 Pfam KNOX1 domain 193 233 IPR005540 GO:0003677|GO:0005634
Cmo12g00302 494 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 4 ISOFORM X1 57 459 - -
Cmo12g00302 494 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00302 Cmo-Chr12:1887315 Cmo15g01252 Cmo-Chr15:8604183 1.76E-116 dispersed
Cmo01g01539 Cmo-Chr1:11883239 Cmo12g00302 Cmo-Chr12:1887315 0 wgd
Cmo12g00302 Cmo-Chr12:1887315 Cmo05g00368 Cmo-Chr5:1662445 0 wgd
Cmo12g00302 Cmo-Chr12:1887315 Cmo09g00434 Cmo-Chr9:1954115 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10709 PF03791 KNOX2 2.80E-18 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00302 - - csv:101213817 768.074